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    Ankrd48 ankyrin repeat domain 48 [ Mus musculus (house mouse) ]

    Gene ID: 76389, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Ankrd48provided by MGI
    Official Full Name
    ankyrin repeat domain 48provided by MGI
    Primary source
    MGI:MGI:1923639
    See related
    Ensembl:ENSMUSG00000020481 AllianceGenome:MGI:1923639
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    GC3; Ankrd36; 1700008J08Rik; 1700012M14Rik
    Expression
    Restricted expression toward testis adult (RPKM 34.3) See more
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    Genomic context

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    See Ankrd48 in Genome Data Viewer
    Location:
    11 A1; 11 3.71 cM
    Exon count:
    35
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (5519680..5639617)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (5569680..5689617)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39573 Neighboring gene predicted gene 3186 Neighboring gene predicted gene 11964 Neighboring gene predicted gene, 53663 Neighboring gene mitochondrial ribosomal protein S24

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Expression of testicular germ cell genes identified by differential display analysis. Anway MD, et al. J Androl, 2003 Mar-Apr. PMID 12634303
    2. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
    3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    ankyrin repeat domain 36

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419746.1 → NP_001406675.1  ankyrin repeat domain 36 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AL662876, AL669935

    2. NM_023816.3 → NP_076305.2  ankyrin repeat domain 36 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL662876, AL669935
      Consensus CDS
      CCDS36103.1
      UniProtKB/TrEMBL
      D3Z4K0, Q5QNR3
      Related
      ENSMUSP00000105482.2, ENSMUST00000109856.8
      Conserved Domains (3) summary
      cd00204
      Location:61 → 186
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:37 → 130
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:68 → 97
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      5519680..5639617
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017314823.2 → XP_017170312.1  ankyrin repeat domain 36 isoform X4

      UniProtKB/TrEMBL
      Q5QNR3
      Related
      ENSMUSP00000122397.2, ENSMUST00000118112.9
      Conserved Domains (2) summary
      sd00045
      Location:68 → 97
      ANK; ANK repeat [structural motif]
      cl39094
      Location:57 → 240
      Ank_2; Ankyrin repeats (3 copies)

    2. XM_017314820.1 → XP_017170309.1  ankyrin repeat domain 36 isoform X1

      UniProtKB/TrEMBL
      Q5QNR3
      Conserved Domains (2) summary
      sd00045
      Location:68 → 97
      ANK; ANK repeat [structural motif]
      cl39094
      Location:57 → 240
      Ank_2; Ankyrin repeats (3 copies)

    3. XM_017314821.1 → XP_017170310.1  ankyrin repeat domain 36 isoform X2

      UniProtKB/TrEMBL
      Q5QNR3
      Conserved Domains (2) summary
      sd00045
      Location:68 → 97
      ANK; ANK repeat [structural motif]
      cl39094
      Location:57 → 240
      Ank_2; Ankyrin repeats (3 copies)

    4. XM_017314828.1 → XP_017170317.1  ankyrin repeat domain 36 isoform X10

      Conserved Domains (2) summary
      sd00045
      Location:68 → 97
      ANK; ANK repeat [structural motif]
      cl39094
      Location:57 → 240
      Ank_2; Ankyrin repeats (3 copies)

    5. XM_017314822.1 → XP_017170311.1  ankyrin repeat domain 36 isoform X3

      UniProtKB/TrEMBL
      Q5QNR3
      Conserved Domains (2) summary
      sd00045
      Location:68 → 97
      ANK; ANK repeat [structural motif]
      cl39094
      Location:57 → 240
      Ank_2; Ankyrin repeats (3 copies)

    6. XM_017314824.1 → XP_017170313.1  ankyrin repeat domain 36 isoform X5

      UniProtKB/TrEMBL
      Q5QNR3
      Conserved Domains (2) summary
      sd00045
      Location:68 → 97
      ANK; ANK repeat [structural motif]
      cl39094
      Location:57 → 240
      Ank_2; Ankyrin repeats (3 copies)

    7. XM_006514890.2 → XP_006514953.1  ankyrin repeat domain 36 isoform X6

      UniProtKB/TrEMBL
      Q5QNR3
      Conserved Domains (2) summary
      sd00045
      Location:68 → 97
      ANK; ANK repeat [structural motif]
      cl39094
      Location:57 → 240
      Ank_2; Ankyrin repeats (3 copies)

    8. XM_030246415.1 → XP_030102275.1  ankyrin repeat domain 36 isoform X7

      UniProtKB/TrEMBL
      Q5QNR3
      Conserved Domains (2) summary
      sd00045
      Location:68 → 97
      ANK; ANK repeat [structural motif]
      cl39094
      Location:57 → 240
      Ank_2; Ankyrin repeats (3 copies)

    9. XM_017314827.1 → XP_017170316.1  ankyrin repeat domain 36 isoform X9

    10. XM_017314826.2 → XP_017170315.1  ankyrin repeat domain 36 isoform X8

    RNA

    1. XR_001780072.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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