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    PF3D7_0209800 ATP-dependent RNA helicase UAP56 [ Plasmodium falciparum 3D7 ]

    Gene ID: 812689, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_0209800
    Gene description
    ATP-dependent RNA helicase UAP56
    Locus tag
    PF3D7_0209800
    See related
    PlasmoDB:PF3D7_0209800; VEuPathDB:PF3D7_0209800
    Gene type
    protein coding
    RNA name
    ATP-dependent RNA helicase UAP56
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_0209800 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_037280.1 (404281..406355, complement)

    Chromosome 2 - NC_037280.1Genomic Context describing neighboring genes Neighboring gene transporter, putative Neighboring gene RING zinc finger protein, putative Neighboring gene ncRNA Neighboring gene secretory complex protein 61 gamma subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037280.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and characterization of Plasmodium falciparum UAP56 homolog: evidence for the coupling of RNA binding and splicing activity by site-directed mutations. Shankar J, et al. Arch Biochem Biophys, 2008 Oct 15. PMID 18722339
    2. Transcriptome-wide dynamics of extensive m(6)A mRNA methylation during Plasmodium falciparum blood-stage development. Baumgarten S, et al. Nat Microbiol, 2019 Dec. PMID 31384004, Free PMC Article
    3. Functional Characterization of the m(6)A-Dependent Translational Modulator PfYTH.2 in the Human Malaria Parasite. Sinha A, et al. mBio, 2021 Apr 27. PMID 33906926, Free PMC Article
    4. Chromosome 2 sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, et al. Science, 1998 Nov 6. PMID 9804551
    5. Identification of Plasmodium falciparum nuclear proteins by mass spectrometry and proposed protein annotation. Briquet S, et al. PLoS One, 2018. PMID 30379851, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables RNA binding HDA PubMed 
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA N6-methyladenosine methyltransferase complex HDA PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus HDA PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent RNA helicase UAP56
    XP_001349607.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_037280.1 Reference assembly

      Range
      404281..406355 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001349571.1 → XP_001349607.1  ATP-dependent RNA helicase UAP56 [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001349607.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024VEJ2, A0A024WXW6, A0A024XE87, A0A0L7K852, A7U5W6, Q9TY94, W4J833, W7FLD5, W7FQS9, W7JW91, W7KN87
      Conserved Domains (2) summary
      cd18787
      Location:293 → 422
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd17950
      Location:55 → 282
      DEADc_DDX39; DEAD-box helicase domain of DEAD box protein 39
    Nucleotide Protein
    Heading Accession and Version

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