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    CG3078 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 31211, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG3078provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0023524
    Locus tag
    Dmel_CG3078
    See related
    AllianceGenome:FB:FBgn0023524
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG3078; EG:30B8.6
    Summary
    Predicted to enable potassium channel regulator activity. Predicted to be involved in regulation of muscle contraction and regulation of potassium ion transport. Predicted to be active in plasma membrane and striated muscle dense body. Is expressed in adult head; embryonic brain; larval ventral nerve cord; and ventral nerve cord primordium. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG3078 in Genome Data Viewer
    Location:
    2F2-2F2; 1-0.9 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (2254403..2259863, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (2148436..2153896, complement)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene tempura Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The mirtron miR-1010 functions in concert with its host gene SKIP to balance elevation of nAcRβ2. Amourda C, et al. Sci Rep, 2020 Feb 3. PMID 32015391, Free PMC Article
    2. Evolutionary Dynamics of Abundant Stop Codon Readthrough. Jungreis I, et al. Mol Biol Evol, 2016 Dec. PMID 27604222, Free PMC Article
    3. Genomic mapping of Suppressor of Hairy-wing binding sites in Drosophila. Adryan B, et al. Genome Biol, 2007. PMID 17705839, Free PMC Article
    4. Comparison of parallel high-throughput RNA sequencing between knockout of TDP-43 and its overexpression reveals primarily nonreciprocal and nonoverlapping gene expression changes in the central nervous system of Drosophila. Hazelett DJ, et al. G3 (Bethesda), 2012 Jul. PMID 22870402, Free PMC Article
    5. From first base: the sequence of the tip of the X chromosome of Drosophila melanogaster, a comparison of two sequencing strategies. Benos PV, et al. Genome Res, 2001 May. PMID 11337470, Free PMC Article

    See all (24) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables potassium channel regulator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of muscle contraction IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of potassium ion transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in striated muscle dense body IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG3078-PA
    CG3078-PB
    CG3078-PC
    CG3078-PD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      2254403..2259863 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001369995.1 → NP_001356929.1  uncharacterized protein Dmel_CG3078, isoform C [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A4D6K262, Q8SXC8
      Conserved Domains (2) summary
      cl21462
      Location:11 → 43
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
      cl28910
      Location:496 → 731
      MFS; Major Facilitator Superfamily

    2. NM_001369996.1 → NP_001356930.1  uncharacterized protein Dmel_CG3078, isoform D [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A4D6K3U9, Q8SXC8
      Conserved Domains (2) summary
      cl21462
      Location:11 → 43
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
      cl28910
      Location:496 → 731
      MFS; Major Facilitator Superfamily

    3. NM_130635.3 → NP_569991.2  uncharacterized protein Dmel_CG3078, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_569991.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8SXC8, Q9W502
      Related
      FBpp0070399
      Conserved Domains (1) summary
      cl21462
      Location:11 → 43
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    4. NM_001297888.1 → NP_001284817.1  uncharacterized protein Dmel_CG3078, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001284817.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8SXC8, X2JDK7
      Conserved Domains (1) summary
      cl21462
      Location:11 → 43
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A4D6K262 A0A4D6K262
    A0A4D6K3U9 A0A4D6K3U9
    O46076 O46076
    Q8SXC8 Q8SXC8
    Q9W502 Q9W502
    X2JDK7 X2JDK7

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