U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    gspD Type II secretion system protein GspD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947822, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    gspD
    Official Full Name
    Type II secretion system protein GspD
    Primary source
    ECOCYC:G7703
    Locus tag
    b3325
    See related
    ASAP:ABE-0010879
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3312; yheF
    Summary
    A divergon is a regulon comprised of two adjacent divergent operons or genes. [More information is available at EcoGene: EG12890]. In Escherichia coli, gspD is a member of an operon of genes (gspC-O) which are not normally expressed but are homologous to those encoding the secreton, or type II secretion machinery in Klebsiella oxytoca and Aeromonase hydrophila, among others . [More information is available at EcoCyc: G7703].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (3456377..3458329)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative general secretion pathway protein B Neighboring gene Type II secretion system protein GspA Neighboring gene Type II secretion system protein GspC Neighboring gene Type II secretion system protein GspE Neighboring gene Type II secretion system protein GspF Neighboring gene Type II secretion system protein GspG

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Structural insights into the secretin translocation channel in the type II secretion system. Yan Z, et al. Nat Struct Mol Biol, 2017 Feb. PMID 28067918
    2. pIV, a filamentous phage protein that mediates phage export across the bacterial cell envelope, forms a multimer. Kazmierczak BI, et al. J Mol Biol, 1994 Apr 29. PMID 8158648
    3. A superfamily of proteins involved in different secretion pathways in gram-negative bacteria: modular structure and specificity of the N-terminal domain. Genin S, et al. Mol Gen Genet, 1994 Apr. PMID 8190064
    4. Insertion of an outer membrane protein in Escherichia coli requires a chaperone-like protein. Hardie KR, et al. EMBO J, 1996 Mar 1. PMID 8605893, Free PMC Article
    5. Biology of type II secretion. Sandkvist M. Mol Microbiol, 2001 Apr. PMID 11309111

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein secretion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in protein secretion by the type II secretion system IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cell outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of type II protein secretion system complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of type II protein secretion system complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Type II secretion system protein GspD

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3456377..3458329
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417784.4 Type II secretion system protein GspD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417784.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6N8QWT0, A0A8T5YE14
      Conserved Domains (1) summary
      TIGR02517
      Location:30 → 604
      type_II_gspD; type II secretion system protein D
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.