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    Zfp418l1 zinc finger protein 418 like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 691135, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Zfp418l1provided by RGD
    Official Full Name
    zinc finger protein 418 like 1provided by RGD
    Primary source
    RGD:1587451
    See related
    AllianceGenome:RGD:1587451
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 66.2), Brain (RPKM 56.8) and 9 other tissues See more
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    Genomic context

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    See Zfp418l1 in Genome Data Viewer
    Location:
    1q12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (75671211..75684615)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (66638112..66649875)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (69672957..69684113)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 418 Neighboring gene vomeronasal 2 receptor, pseudogene 46 Neighboring gene vomeronasal 1 receptor pseudogene 42 Neighboring gene zinc finger protein 772

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 418-like
    Names
    zinc finger protein 271-like
    zinc finger protein 883-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      75671211..75684615
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008759083.4 → XP_008757305.3  zinc finger protein 418-like isoform X1

      UniProtKB/TrEMBL
      A0A8I6A7D0
      Conserved Domains (4) summary
      COG5048
      Location:341 → 743
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:597 → 617
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:47 → 87
      KRAB; KRAB box
      pfam13465
      Location:302 → 324
      zf-H2C2_2; Zinc-finger double domain

    2. XM_039100461.2 → XP_038956389.1  zinc finger protein 418-like isoform X4

      Conserved Domains (4) summary
      COG5048
      Location:341 → 673
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:597 → 617
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:47 → 87
      KRAB; KRAB box
      pfam13465
      Location:302 → 324
      zf-H2C2_2; Zinc-finger double domain

    3. XM_039100458.2 → XP_038956386.1  zinc finger protein 418-like isoform X3

      Conserved Domains (4) summary
      COG5048
      Location:327 → 729
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:583 → 603
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:44 → 73
      KRAB; KRAB box
      pfam13465
      Location:288 → 310
      zf-H2C2_2; Zinc-finger double domain

    4. XM_039100457.2 → XP_038956385.1  zinc finger protein 418-like isoform X2

      UniProtKB/TrEMBL
      A0A8I5ZKX0
      Conserved Domains (4) summary
      COG5048
      Location:328 → 730
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:584 → 604
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:34 → 74
      KRAB; KRAB box
      pfam13465
      Location:289 → 311
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein Strain
    Heading Accession and Version

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