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    LOC542450 Eukaryotic initiation factor-5 [ Zea mays ]

    Gene ID: 542450, updated on 27-Nov-2024

    Summary

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    Gene symbol
    LOC542450
    Gene description
    Eukaryotic initiation factor-5
    Locus tag
    ZEAMMB73_Zm00001d000300
    See related
    EnsemblRapid:Zm00001eb208030
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    EIF5; eIF-5; GRMZM2G165917
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    Genomic context

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    See LOC542450 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 4 NC_050099.1 (246127966..246131293, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) Unplaced Scaffold NW_017972107.1 (23999..27326)

    Chromosome 4 - NC_050099.1Genomic Context describing neighboring genes Neighboring gene putative protein phosphatase 2C family protein Neighboring gene exocyst complex component EXO70A1 Neighboring gene mitogen-activated protein kinase 3-like Neighboring gene calcium-transporting ATPase 4, endoplasmic reticulum-type-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structure, organization and expression of the eukaryotic translation initiation factor 5, eIF-5, gene in Zea mays. López Ribera I, et al. Gene, 1999 Nov 29. PMID 10580155
    2. The eukaryotic translation initiation factor 5, eIF-5, a protein from Zea mays, containing a zinc-finger structure, binds nucleic acids in a zinc-dependent manner. López Ribera I, et al. Biochem Biophys Res Commun, 1997 Jul 18. PMID 9240471
    3. Annotation and expression profile analysis of 2073 full-length cDNAs from stress-induced maize (Zea mays L.) seedlings. Jia J, et al. Plant J, 2006 Dec. PMID 17076806
    4. Characterization of the maize endosperm transcriptome and its comparison to the rice genome. Lai J, et al. Genome Res, 2004 Oct. PMID 15466291, Free PMC Article
    5. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GDP-dissociation inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables eukaryotic initiation factor eIF2 binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in formation of cytoplasmic translation initiation complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in formation of translation preinitiation complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translational initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    eukaryotic translation initiation factor 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001112008.2 → NP_001105478.2  eukaryotic translation initiation factor 5

      Status: VALIDATED

      Source sequence(s)
      EU960887, FL140895
      UniProtKB/Swiss-Prot
      P55876, Q9SBX1
      UniProtKB/TrEMBL
      B6T7C2
      Related
      Zm00001eb208030_P001, Zm00001eb208030_T001
      Conserved Domains (2) summary
      cd11561
      Location:299 → 447
      W2_eIF5; C-terminal W2 domain of eukaryotic translation initiation factor 5
      smart00653
      Location:15 → 129
      eIF2B_5; domain present in translation initiation factor eIF2B and eIF5

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050099.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      246127966..246131293 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P55876.1 GenPept UniProtKB/Swiss-Prot:P55876

    Gene LinkOut

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