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    CG1090 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 40551, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG1090provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0037238
    Locus tag
    Dmel_CG1090
    See related
    AllianceGenome:FB:FBgn0037238
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG1090
    Summary
    Predicted to enable calcium channel activity and calcium, potassium:sodium antiporter activity. Predicted to be involved in calcium ion transmembrane transport; intracellular calcium ion homeostasis; and sodium ion transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in adult head. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG1090 in Genome Data Viewer
    Location:
    82A4-82A4; 3-47.1 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (4359883..4366855)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (185605..192577)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene huckebein Neighboring gene long non-coding RNA:CR44922 Neighboring gene Sideroflexin 1/3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Processing of horizontal optic flow in three visual interneurons of the Drosophila brain. Schnell B, et al. J Neurophysiol, 2010 Mar. PMID 20089816
    2. A novel post-developmental role of the Hox genes underlies normal adult behavior. Raouf Issa A, et al. Proc Natl Acad Sci U S A, 2022 Dec 6. PMID 36454751, Free PMC Article
    3. 5-Hydroxymethylation-associated epigenetic modifiers of Alzheimer's disease modulate Tau-induced neurotoxicity. Bernstein AI, et al. Hum Mol Genet, 2016 Jun 15. PMID 27060332, Free PMC Article
    4. Pleiotropic fitness effects of the Tre1-Gr5a region in Drosophila melanogaster. Rollmann SM, et al. Nat Genet, 2006 Jul. PMID 16783380
    5. RNA editing in Drosophila melanogaster: New targets and functional consequences. Stapleton M, et al. RNA, 2006 Nov. PMID 17018572, Free PMC Article

    See all (36) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    mobile_element

    • Loc: 4362022-4362390 mobile_element_type = transposon:INE-1{}3676

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables calcium channel activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables calcium, potassium:sodium antiporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables calcium, potassium:sodium antiporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in calcium ion transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in intracellular calcium ion homeostasis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in sodium ion transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG1090-PE
    CG1090-PG
    CG1090-PH
    CG1090-PI

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      4359883..4366855
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001275323.1 → NP_001262252.1  uncharacterized protein Dmel_CG1090, isoform I [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262252.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8IPM4, Q8SXA2, Q9VN12
      UniProtKB/TrEMBL
      A0A0B4KGG6
      Conserved Domains (2) summary
      TIGR00367
      Location:116 → 609
      TIGR00367; K+-dependent Na+/Ca+ exchanger related-protein
      pfam01699
      Location:463 → 615
      Na_Ca_ex; Sodium/calcium exchanger protein

    2. NM_001275322.1 → NP_001262251.1  uncharacterized protein Dmel_CG1090, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262251.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4KFJ3
      Conserved Domains (1) summary
      TIGR00927
      Location:75 → 140
      2A1904; K+-dependent Na+/Ca+ exchanger

    3. NM_141202.4 → NP_649459.4  uncharacterized protein Dmel_CG1090, isoform G [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_649459.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8IPM4, Q8SXA2, Q9VN12
      UniProtKB/TrEMBL
      A0A0B4KGG6
      Conserved Domains (2) summary
      TIGR00367
      Location:116 → 609
      TIGR00367; K+-dependent Na+/Ca+ exchanger related-protein
      pfam01699
      Location:463 → 615
      Na_Ca_ex; Sodium/calcium exchanger protein

    4. NM_164343.2 → NP_730819.2  uncharacterized protein Dmel_CG1090, isoform H [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_730819.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8IPM4, Q8SXA2, Q9VN12
      UniProtKB/TrEMBL
      A0A0B4KGG6
      Conserved Domains (2) summary
      TIGR00367
      Location:116 → 609
      TIGR00367; K+-dependent Na+/Ca+ exchanger related-protein
      pfam01699
      Location:463 → 615
      Na_Ca_ex; Sodium/calcium exchanger protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0B4KFJ3 A0A0B4KFJ3
    A0A0B4KGG6 A0A0B4KGG6
    Q9VN12.4 Q9VN12

    Gene LinkOut

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