U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    CG6418 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 39218, updated on 17-Dec-2024

    Summary

    Official Symbol
    CG6418provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0036104
    Locus tag
    Dmel_CG6418
    See related
    AllianceGenome:FB:FBgn0036104
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    cg6418; Dmel\CG6418; DmRH27
    Summary
    Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in protein localization. Predicted to be active in nucleus. Is expressed in several structures, including ganglia; larval nervous system; pole plasm; and tracheal primordium. Orthologous to human DDX42 (DEAD-box helicase 42). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See CG6418 in Genome Data Viewer
    Location:
    67F1-67F1; 3-33 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (10876315..10879037, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (10869415..10872137, complement)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR45246 Neighboring gene tonalli Neighboring gene long non-coding RNA:CR45169 Neighboring gene Biogenesis of lysosome-related organelles complex 1, subunit 4 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Interactions

    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables ATP binding  
    enables RNA binding  
    enables RNA helicase activity  
    enables RNA helicase activity  
    enables nucleic acid binding  
    Process Evidence Code Pubs
    involved_in protein localization  
    Component Evidence Code Pubs
    is_active_in nucleus  

    General protein information

    Preferred Names
    uncharacterized protein
    Names
    CG6418-PB
    NP_648413.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      10876315..10879037 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_140156.3 → NP_648413.1  uncharacterized protein Dmel_CG6418 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_648413.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VTC1
      Related
      FBpp0076003
      Conserved Domains (3) summary
      smart00487
      Location:284 → 489
      DEXDc; DEAD-like helicases superfamily
      cd00268
      Location:271 → 475
      DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
      pfam00271
      Location:504 → 609
      Helicase_C; Helicase conserved C-terminal domain
    External link. Please review our privacy policy.