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    rpsP 30S ribosomal subunit protein S16 [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947103, updated on 3-Dec-2024

    Summary

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    Official Symbol
    rpsP
    Official Full Name
    30S ribosomal subunit protein S16
    Primary source
    ECOCYC:EG10915
    Locus tag
    b2609
    See related
    ASAP:ABE-0008583
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2606
    Summary
    The S16 protein is a component of the 30S subunit of the ribosome and is essential for viability . [More information is available at EcoCyc: EG10915].
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    Genomic context

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    Sequence:
    NC_000913.3 (2745937..2746185, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene tRNA m(1)G37 methyltransferase Neighboring gene ribosome maturation factor RimM Neighboring gene signal recognition particle protein component Neighboring gene cytochrome c assembly family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The complete amino acid sequence of protein S16 from Escherichia coli. Vandekerckhove J, et al. Hoppe Seylers Z Physiol Chem, 1977 Aug. PMID 336510
    2. S16 throws a conformational switch during assembly of 30S 5' domain. Ramaswamy P, et al. Nat Struct Mol Biol, 2009 Apr. PMID 19343072, Free PMC Article
    3. Binding of helix-threading peptides to E. coli 16S ribosomal RNA and inhibition of the S15-16S complex. Gooch BD, et al. Chembiochem, 2005 Dec. PMID 16245373
    4. Assembly mapping of 30 S ribosomal proteins from Escherichia coli. Further studies. Held WA, et al. J Biol Chem, 1974 May 25. PMID 4598121
    5. Genes encoding ribosomal proteins S16 and L19 form a gene cluster at 56.4 min in Escherichia coli. Isono K. Mol Gen Genet, 1978 Oct 24. PMID 368562

    See all (36) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The results show that binding of S16 to helices 15 and 17 results in a conformational switch at helix 3, 30 A away, which stabilizes tertiary interactions in the 30S decoding site.
      Title: S16 throws a conformational switch during assembly of 30S 5' domain.
    2. N-terminus verified by Edman degradation on complete protein
      Title: Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA endonuclease activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables four-way junction DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in cytoplasmic translation NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within ribosomal small subunit assembly IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of cytosolic small ribosomal subunit IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of cytosolic small ribosomal subunit IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    30S ribosomal subunit protein S16

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2745937..2746185 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417100.1 30S ribosomal subunit protein S16 [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417100.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B9AT70
      Conserved Domains (1) summary
      PRK00040
      Location:1 → 75
      rpsP; 30S ribosomal protein S16; Reviewed
    Nucleotide Protein
    Heading Accession and Version

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