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    rzpD putative prophage endopeptidase RzpD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945929, updated on 17-Dec-2024

    Summary

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    Official Symbol
    rzpD
    Official Full Name
    putative prophage endopeptidase RzpD
    Primary source
    ECOCYC:G6311
    Locus tag
    b0556
    See related
    ASAP:ABE-0001900
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0547; ybcT
    Summary
    Overexpression causes abnormal biofilm architecture. [More information is available at EcoGene: EG13636].
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    Genomic context

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    Sequence:
    NC_000913.3 (578107..578568)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene IS5 family transposase and trans-activator Neighboring gene putative phage lysis protein Neighboring gene lysozyme Neighboring gene putative prophage lysis lipoprotein RzoD Neighboring gene prophage lipoprotein BorD Neighboring gene DUF1398 domain-containing protein YbcV

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Bacteriophage lambda lysis gene product modified and inserted into Escherichia coli outer membrane: Rz1 lipoprotein. Taylor A, et al. Microb Drug Resist, 1996 Spring. PMID 9158738
    2. Systematic characterization of Escherichia coli genes/ORFs affecting biofilm formation. Tenorio E, et al. FEMS Microbiol Lett, 2003 Aug 8. PMID 12900028
    3. Systems based mapping demonstrates that recovery from alkylation damage requires DNA repair, RNA processing, and translation associated networks. Rooney JP, et al. Genomics, 2009 Jan. PMID 18824089, Free PMC Article
    4. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    5. Rz/Rz1 lysis gene equivalents in phages of Gram-negative hosts. Summer EJ, et al. J Mol Biol, 2007 Nov 9. PMID 17900620

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in defense response to bacterium IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in killing of cells of another organism IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in viral release from host cell by cytolysis IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative prophage endopeptidase RzpD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      578107..578568
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415088.1 putative prophage endopeptidase RzpD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415088.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAN3SE26
      Conserved Domains (1) summary
      pfam03245
      Location:29 → 153
      Phage_lysis; Bacteriophage Rz lysis protein
    Nucleotide Protein
    Heading Accession and Version

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