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    ycaI metallo-beta-lactamase superfamily inner membrane protein YcaI [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945531, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ycaI
    Official Full Name
    metallo-beta-lactamase superfamily inner membrane protein YcaI
    Primary source
    ECOCYC:EG12375
    Locus tag
    b0913
    See related
    ASAP:ABE-0003111
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0904
    Summary
    ycaI is predicted to have a CRP-S promoter co-regulated by both Crp and Sxy (Cameron, 2006). [More information is available at EcoGene: EG12375]. ycaI is not required for spontaneous plasmid transformation on nutrient plates with high agar concentration . [More information is available at EcoCyc: EG12375].
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    Genomic context

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    Sequence:
    NC_000913.3 (964320..966584)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene 30S ribosomal subunit protein S1 Neighboring gene integration host factor subunit beta Neighboring gene ATP-binding lipopolysaccharide transport protein Neighboring gene tetraacyldisaccharide 4'-kinase Neighboring gene interstrand DNA crosslink repair glycosylase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The essential Escherichia coli msbA gene, a multicopy suppressor of null mutations in the htrB gene, is related to the universally conserved family of ATP-dependent translocators. Karow M, et al. Mol Microbiol, 1993 Jan. PMID 8094880
    2. Transforming DNA uptake gene orthologs do not mediate spontaneous plasmid transformation in Escherichia coli. Sun D, et al. J Bacteriol, 2009 Feb. PMID 19011021, Free PMC Article
    3. Non-canonical CRP sites control competence regulons in Escherichia coli and many other gamma-proteobacteria. Cameron AD, et al. Nucleic Acids Res, 2006. PMID 17068078, Free PMC Article
    4. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
    5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    involved_in establishment of competence for transformation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    metallo-beta-lactamase superfamily inner membrane protein YcaI

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      964320..966584
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415433.4 metallo-beta-lactamase superfamily inner membrane protein YcaI [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415433.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7EAC0
      Conserved Domains (1) summary
      PRK11539
      Location:1 → 753
      PRK11539; ComEC family competence protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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