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    yhdY putative ABC transporter membrane subunit YhdY [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947764, updated on 17-Dec-2024

    Summary

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    Official Symbol
    yhdY
    Official Full Name
    putative ABC transporter membrane subunit YhdY
    Primary source
    ECOCYC:EG12836
    Locus tag
    b3270
    See related
    ASAP:ABE-0010736
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3257
    Summary
    Putative ABC transporter YhdWXYZ has an unknown substrate and yhdW' is an apparent pseudogene. [More information is available at EcoGene: EG12836]. YhdY is a membrane component of a predicted amino acid ABC transporter. [More information is available at EcoCyc: EG12836].
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    Genomic context

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    Sequence:
    NC_000913.3 (3421325..3422428)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene putative ABC transporter membrane subunit YhdX Neighboring gene putative ABC transporter ATP-binding subunit YhdZ Neighboring gene 5S ribosomal RNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ATP-binding cassette transporters in Escherichia coli. Moussatova A, et al. Biochim Biophys Acta, 2008 Sep. PMID 18634750
    2. Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation. Zimmer DP, et al. Proc Natl Acad Sci U S A, 2000 Dec 19. PMID 11121068, Free PMC Article
    3. Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. Saurin W, et al. J Mol Evol, 1999 Jan. PMID 9873074
    4. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
    5. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in amino acid transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in amino acid transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in peptide transport NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of ATP-binding cassette (ABC) transporter complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative ABC transporter membrane subunit YhdY

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3421325..3422428
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417736.2 putative ABC transporter membrane subunit YhdY [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417736.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0H3JKP0, D3GYR1
      Conserved Domains (1) summary
      COG0765
      Location:138 → 364
      HisM; ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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