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    ypdC putative AraC-type DNA-binding transcriptional regulator YpdC [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946856, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ypdC
    Official Full Name
    putative AraC-type DNA-binding transcriptional regulator YpdC
    Primary source
    ECOCYC:G7245
    Locus tag
    b2382
    See related
    ASAP:ABE-0007859
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2378
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    Genomic context

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    Sequence:
    NC_000913.3 (2501130..2501987)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene sensor histidine kinase PyrS Neighboring gene DNA-binding transcriptional activator PyrR Neighboring gene putative PTS multiphosphoryl transfer protein FryA Neighboring gene aminopeptidase YpdE Neighboring gene aminopeptidase YpdF

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of a target gene and activating stimulus for the YpdA/YpdB histidine kinase/response regulator system in Escherichia coli. Fried L, et al. J Bacteriol, 2013 Feb. PMID 23222720, Free PMC Article
    2. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
    3. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    4. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
    5. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative AraC-type DNA-binding transcriptional regulator YpdC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2501130..2501987
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416883.1 putative AraC-type DNA-binding transcriptional regulator YpdC [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416883.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T5YAY2
      Conserved Domains (2) summary
      PRK13502
      Location:47 → 279
      PRK13502; HTH-type transcriptional activator RhaR
      smart00342
      Location:197 → 279
      HTH_ARAC; helix_turn_helix, arabinose operon control protein
    Nucleotide Protein
    Heading Accession and Version

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