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    ydcV putative ABC transporter membrane subunit YdcV [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945903, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ydcV
    Official Full Name
    putative ABC transporter membrane subunit YdcV
    Primary source
    ECOCYC:G6754
    Locus tag
    b1443
    See related
    ASAP:ABE-0004809
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1437
    Summary
    Putative YdcVUTS ABC transport system. ydcV, potC and potI are paralogs. [More information is available at EcoGene: EG13765]. YdcV is a membrane component of a predicted spermidine/putrescine ABC transporter. [More information is available at EcoCyc: G6754].
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    Genomic context

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    Sequence:
    NC_000913.3 (1514762..1515556)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative ABC transporter periplasmic binding protein/polyhydroxybutyrate synthase Neighboring gene putative ABC transporter ATP-binding protein YdcT Neighboring gene putative ABC transporter membrane subunit YdcU Neighboring gene gamma-aminobutyraldehyde dehydrogenase Neighboring gene uncharacterized protein YncL

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two different routes for double-stranded DNA transfer in natural and artificial transformation of Escherichia coli. Sun D. Biochem Biophys Res Commun, 2016 Feb 26. PMID 26826386
    2. ATP-binding cassette transporters in Escherichia coli. Moussatova A, et al. Biochim Biophys Acta, 2008 Sep. PMID 18634750
    3. Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation. Zimmer DP, et al. Proc Natl Acad Sci U S A, 2000 Dec 19. PMID 11121068, Free PMC Article
    4. Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. Saurin W, et al. J Mol Evol, 1999 Jan. PMID 9873074
    5. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. dsDNA transfers across the two membranes through different routes in natural and artificial transformation of E. coli.
      Title: Two different routes for double-stranded DNA transfer in natural and artificial transformation of Escherichia coli.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA import into cell involved in transformation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in transmembrane transport NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative ABC transporter membrane subunit YdcV

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1514762..1515556
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415960.1 putative ABC transporter membrane subunit YdcV [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415960.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376K1A4, A0A5B9AK92, A0AAE9Q1W4
      Conserved Domains (1) summary
      COG1177
      Location:5 → 258
      PotC; ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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