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    PCDH11X protocadherin 11X [ Gallus gallus (chicken) ]

    Gene ID: 422264, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PCDH11Xprovided by CGNC
    Official Full Name
    protocadherin 11Xprovided by CGNC
    Primary source
    CGNC:51679
    See related
    Ensembl:ENSGALG00010018092
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    cadherin
    Orthologs
    human mouse all
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    Genomic context

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    See PCDH11X in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (6518626..6972904, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (6553513..7009444, complement)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101748814 Neighboring gene uncharacterized LOC121110813 Neighboring gene uncharacterized LOC107052056 Neighboring gene translation initiation factor IF-2-like Neighboring gene uncharacterized LOC121110699 Neighboring gene uncharacterized LOC121110690

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression of multiple cadherins and catenins in the chick optic tectum. Miskevich F, et al. Mol Cell Neurosci, 1998 Nov. PMID 9828089
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protocadherin-11 X-linked
    Names
    Protocadherin-20
    protocadherin 11 X-linked

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      6518626..6972904 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015278495.4 → XP_015133981.2  protocadherin-11 X-linked isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z4I8
      Related
      ENSGALP00010026021.1, ENSGALT00010043738.1
      Conserved Domains (2) summary
      cd11304
      Location:489 → 582
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam08374
      Location:791 → 991
      Protocadherin

    2. XM_040700491.2 → XP_040556425.1  protocadherin-11 X-linked isoform X2

      UniProtKB/TrEMBL
      A0A1D5NT53, A0A8V0Z4I8
      Related
      ENSGALP00010026018.1, ENSGALT00010043731.1
      Conserved Domains (1) summary
      cd11304
      Location:489 → 582
      Cadherin_repeat; Cadherin tandem repeat domain

    3. XM_040700492.2 → XP_040556426.1  protocadherin-11 X-linked isoform X3

      UniProtKB/TrEMBL
      A0A8V0Z4I8, E1BVK1
      Related
      ENSGALP00010026019.1, ENSGALT00010043732.1
      Conserved Domains (3) summary
      cd11304
      Location:489 → 582
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam08266
      Location:28 → 99
      Cadherin_2; Cadherin-like
      pfam08374
      Location:791 → 991
      Protocadherin

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      6553513..7009444 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040671890.2 → XP_040527824.1  protocadherin-11 X-linked isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z4I8
      Conserved Domains (2) summary
      cd11304
      Location:489 → 582
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam08374
      Location:791 → 991
      Protocadherin

    2. XM_040671889.2 → XP_040527823.1  protocadherin-11 X-linked isoform X5

      UniProtKB/TrEMBL
      A0A8V0Z4I8
      Conserved Domains (1) summary
      cd11304
      Location:489 → 582
      Cadherin_repeat; Cadherin tandem repeat domain

    3. XM_040671887.2 → XP_040527821.1  protocadherin-11 X-linked isoform X4

      UniProtKB/TrEMBL
      A0A1D5NTP6, A0A8V0Z4I8
      Conserved Domains (2) summary
      cd11304
      Location:489 → 582
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam08374
      Location:791 → 991
      Protocadherin

    4. XM_040671888.2 → XP_040527822.1  protocadherin-11 X-linked isoform X4

      UniProtKB/TrEMBL
      A0A1D5NTP6, A0A8V0Z4I8
      Conserved Domains (2) summary
      cd11304
      Location:489 → 582
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam08374
      Location:791 → 991
      Protocadherin

    5. XM_040671891.2 → XP_040527825.1  protocadherin-11 X-linked isoform X2

      UniProtKB/TrEMBL
      A0A1D5NT53, A0A8V0Z4I8
      Conserved Domains (1) summary
      cd11304
      Location:489 → 582
      Cadherin_repeat; Cadherin tandem repeat domain

    6. XM_040671892.2 → XP_040527826.1  protocadherin-11 X-linked isoform X3

      UniProtKB/TrEMBL
      A0A8V0Z4I8, E1BVK1
      Conserved Domains (3) summary
      cd11304
      Location:489 → 582
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam08266
      Location:28 → 99
      Cadherin_2; Cadherin-like
      pfam08374
      Location:791 → 991
      Protocadherin
    Nucleotide Protein Strain
    Heading Accession and Version

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