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    GPATCH1 G-patch domain containing 1 [ Gallus gallus (chicken) ]

    Gene ID: 415772, updated on 17-Aug-2024

    Summary

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    Symbol
    GPATCH1provided by CGNC
    Full Name
    G-patch domain containing 1provided by CGNC
    Primary source
    CGNC:3591
    See related
    Ensembl:ENSGALG00010025949
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    GPATC1
    Orthologs
    human mouse all
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    Genomic context

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    See GPATCH1 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 11 NC_052542.1 (9663117..9676493)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 11 NC_052583.1 (10007407..10020780)

    Chromosome 11 - NC_052542.1Genomic Context describing neighboring genes Neighboring gene Fanconi anemia core complex associated protein 24 Neighboring gene rhophilin Rho GTPase binding protein 2 Neighboring gene uncharacterized LOC121111705 Neighboring gene WD repeat domain 88 Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene uncharacterized LOC121106550

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    G patch domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052542.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      9663117..9676493
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004944230.5 → XP_004944287.2  G patch domain-containing protein 1

      UniProtKB/TrEMBL
      A0A8V1A4T5
      Related
      ENSGALP00010039062.1, ENSGALT00010063279.1
      Conserved Domains (1) summary
      cl02611
      Location:156 → 173
      G-patch; G-patch domain

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052583.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      10007407..10020780
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040681261.2 → XP_040537195.1  G patch domain-containing protein 1

      UniProtKB/TrEMBL
      A0A8V1A4T5
      Conserved Domains (1) summary
      cl02611
      Location:156 → 173
      G-patch; G-patch domain

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001006127.1: Suppressed sequence

      Description
      NM_001006127.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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