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    CACNG3 calcium voltage-gated channel auxiliary subunit gamma 3 [ Gallus gallus (chicken) ]

    Gene ID: 395378, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CACNG3provided by CGNC
    Official Full Name
    calcium voltage-gated channel auxiliary subunit gamma 3provided by CGNC
    Primary source
    CGNC:4512
    See related
    Ensembl:ENSGALG00010018359
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See CACNG3 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 14 NC_052545.1 (6749026..6766731)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 14 NC_052586.1 (6744991..6762708)

    Chromosome 14 - NC_052545.1Genomic Context describing neighboring genes Neighboring gene aquaporin 8 Neighboring gene protein kinase C beta Neighboring gene microRNA 1615 Neighboring gene uncharacterized LOC107054619 Neighboring gene RB binding protein 6, ubiquitin ligase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of chicken embryonic gonad expressed sequenced tags. Shin JH, et al. Anim Genet, 2006 Feb. PMID 16441308
    2. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables channel regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables voltage-gated calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neurotransmitter receptor internalization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neurotransmitter receptor transport, postsynaptic endosome to lysosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of synaptic transmission, glutamatergic IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in postsynaptic neurotransmitter receptor diffusion trapping IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of AMPA receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmission of nerve impulse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of AMPA glutamate receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic density membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    voltage-dependent calcium channel gamma-3 subunit
    Names
    IPR328-like protein
    calcium channel, voltage-dependent, gamma subunit 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001397083.1 → NP_001384012.1  voltage-dependent calcium channel gamma-3 subunit

      Status: VALIDATED

      Source sequence(s)
      AF118819, BU363902, CV854396, JAENSK010000257
      UniProtKB/TrEMBL
      A0A1D5PTF2, Q98UH4
      Related
      ENSGALP00010026375.1, ENSGALT00010044329.1
      Conserved Domains (1) summary
      pfam00822
      Location:6 → 196
      PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052545.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      6749026..6766731
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040647313.2 → XP_040503247.1  voltage-dependent calcium channel gamma-3 subunit isoform X1

      Conserved Domains (1) summary
      cl21598
      Location:50 → 127
      PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052586.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      6744991..6762708
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046927277.1 → XP_046783233.1  voltage-dependent calcium channel gamma-3 subunit isoform X1

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_204660.2: Suppressed sequence

      Description
      NM_204660.2: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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