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    Rbm13 RNA-binding motif protein 13 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 31818, updated on 9-Dec-2024

    Summary

    Official Symbol
    Rbm13provided by FlyBase
    Official Full Name
    RNA-binding motif protein 13provided by FlyBase
    Primary source
    FLYBASE:FBgn0030067
    Locus tag
    Dmel_CG10648
    See related
    AllianceGenome:FB:FBgn0030067
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG10648; Dmel\CG10648; RBM13
    Summary
    Predicted to be involved in maturation of 5.8S rRNA and maturation of LSU-rRNA. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in nucleolus. Orthologous to human MAK16 (MAK16 homolog). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See Rbm13 in Genome Data Viewer
    Location:
    8B7-8B7; 1-25 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (8901699..8903761)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (8795732..8797794)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene Moesin Neighboring gene Uroporphyrinogen III synthase 1 Neighboring gene long non-coding RNA:CR44111 Neighboring gene enhancer of rudimentary Neighboring gene retinal degeneration A

    Genomic regions, transcripts, and products

    Interactions

    General gene information

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in maturation of 5.8S rRNA  
    involved_in maturation of LSU-rRNA  
    Component Evidence Code Pubs
    is_active_in nucleolus  
    part_of preribosome, large subunit precursor  

    General protein information

    Preferred Names
    RNA-binding motif protein 13
    Names
    CG10648-PA
    CG10648-PB
    Rbm13-PA
    Rbm13-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      8901699..8903761
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001298097.1 → NP_001285026.1  RNA-binding motif protein 13, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001285026.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W3B2
      Conserved Domains (3) summary
      PLN00040
      Location:1 → 225
      PLN00040; Protein MAK16 homolog; Provisional
      pfam01778
      Location:6 → 115
      Ribosomal_L28e; Ribosomal L28e protein family
      pfam04874
      Location:139 → 241
      Mak16; Mak16 protein C-terminal region
    2. NM_132280.5 → NP_572508.1  RNA-binding motif protein 13, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_572508.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W3B2
      Related
      FBpp0071198
      Conserved Domains (3) summary
      PLN00040
      Location:1 → 225
      PLN00040; Protein MAK16 homolog; Provisional
      pfam01778
      Location:6 → 115
      Ribosomal_L28e; Ribosomal L28e protein family
      pfam04874
      Location:139 → 241
      Mak16; Mak16 protein C-terminal region
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