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    rbm-26 C3H1-type domain-containing protein;RRM domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 175800, updated on 9-Dec-2024

    Summary

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    Official Symbol
    rbm-26
    Official Full Name
    C3H1-type domain-containing protein;RRM domain-containing protein
    Primary source
    WormBase:WBGene00015143
    Locus tag
    CELE_B0336.3
    See related
    AllianceGenome:WB:WBGene00015143
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable RNA binding activity. Predicted to be active in nucleus. Is expressed in several structures, including enteric muscle; hypodermis; nervous system; pharynx; and reproductive system. Orthologous to several human genes including RBM27 (RNA binding motif protein 27). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See rbm-26 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    8
    Sequence:
    Chromosome: III; NC_003281.10 (5711542..5714846)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Major sperm protein Neighboring gene Uncharacterized protein Neighboring gene ADP-ribosylation factor 1-like 2 Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and analysis of internal promoters in Caenorhabditis elegans operons. Huang P, et al. Genome Res, 2007 Oct. PMID 17712020, Free PMC Article
    2. MUT-14 and SMUT-1 DEAD box RNA helicases have overlapping roles in germline RNAi and endogenous siRNA formation. Phillips CM, et al. Curr Biol, 2014 Apr 14. PMID 24684932, Free PMC Article
    3. Efficient target-selected mutagenesis in Caenorhabditis elegans: toward a knockout for every gene. Cuppen E, et al. Genome Res, 2007 May. PMID 17416746, Free PMC Article
    4. The C. elegans regulatory factor X (RFX) DAF-19M module: A shift from general ciliogenesis to cell-specific ciliary and behavioral specialization. Ahn S, et al. Cell Rep, 2022 Apr 12. PMID 35417689
    5. An integrated strategy to study muscle development and myofilament structure in Caenorhabditis elegans. Meissner B, et al. PLoS Genet, 2009 Jun. PMID 19557190, Free PMC Article

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    C3H1-type domain-containing protein;RRM domain-containing protein
    NP_001348727.1
    • Confirmed by transcript evidence
    NP_001348728.1
    • Partially confirmed by transcript evidence
    NP_001348729.1
    • Confirmed by transcript evidence
    NP_498234.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      5711542..5714846
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001361715.4 → NP_001348727.1  C3H1-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2K5ATS4
      Conserved Domains (5) summary
      cd12257
      Location:365 → 438
      RRM1_RBM26_like; RNA recognition motif 1 in vertebrate RNA-binding protein 26 (RBM26) and similar proteins
      pfam00642
      Location:209 → 232
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      pfam14967
      Location:246 → 340
      FAM70; FAM70 protein
      cl02562
      Location:12 → 77
      PWI; PWI domain
      cl17169
      Location:624 → 678
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. NM_001361713.4 → NP_001348728.1  C3H1-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2K5ATS7
      Conserved Domains (5) summary
      PHA02682
      Location:250 → 337
      PHA02682; ORF080 virion core protein; Provisional
      cd12257
      Location:367 → 440
      RRM1_RBM26_like; RNA recognition motif 1 in vertebrate RNA-binding protein 26 (RBM26) and similar proteins
      pfam00642
      Location:209 → 232
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      cl02562
      Location:12 → 77
      PWI; PWI domain
      cl17169
      Location:626 → 680
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. NM_065833.5 → NP_498234.1  C3H1-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498234.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q10954
      Conserved Domains (5) summary
      cd12257
      Location:365 → 438
      RRM1_RBM26_like; RNA recognition motif 1 in vertebrate RNA-binding protein 26 (RBM26) and similar proteins
      pfam00642
      Location:209 → 232
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      pfam14967
      Location:246 → 340
      FAM70; FAM70 protein
      cl02562
      Location:12 → 77
      PWI; PWI domain
      cl17169
      Location:624 → 678
      RRM_SF; RNA recognition motif (RRM) superfamily

    4. NM_001361714.4 → NP_001348729.1  RRM domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2K5ATT0
      Conserved Domains (4) summary
      PHA03247
      Location:77 → 259
      PHA03247; large tegument protein UL36; Provisional
      cd12257
      Location:301 → 374
      RRM1_RBM26_like; RNA recognition motif 1 in vertebrate RNA-binding protein 26 (RBM26) and similar proteins
      cl02562
      Location:12 → 77
      PWI; PWI domain
      cl17169
      Location:560 → 614
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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