U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    rnlB antitoxin RnlB [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947113, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    rnlB
    Official Full Name
    antitoxin RnlB
    Primary source
    ECOCYC:G7366
    Locus tag
    b2631
    See related
    ASAP:ABE-0008665
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2627; yfjO
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (2766984..2767355)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative helicase YfjK Neighboring gene anti-bacteriophage protein Neighboring gene protein YfjM Neighboring gene RNase LS, toxin of the RnlAB toxin-antitoxin system Neighboring gene putative GTP-binding protein YfjP Neighboring gene DUF932 domain-containing protein YfjQ

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. RnlB Antitoxin of the Escherichia coli RnlA-RnlB Toxin-Antitoxin Module Requires RNase HI for Inhibition of RnlA Toxin Activity. Naka K, et al. Toxins (Basel), 2017 Jan 11. PMID 28085056, Free PMC Article
    2. Escherichia coli rnlA and rnlB compose a novel toxin-antitoxin system. Koga M, et al. Genetics, 2011 Jan. PMID 20980243, Free PMC Article
    3. Conserved and variable functions of the sigmaE stress response in related genomes. Rhodius VA, et al. PLoS Biol, 2006 Jan. PMID 16336047, Free PMC Article
    4. Scanning the Escherichia coli chromosome by random transposon mutagenesis and multiple phenotypic screening. Serina S, et al. Res Microbiol, 2004 Oct. PMID 15380559
    5. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RNase HI recruits RnlB to RnlA through N-repeated domain for inhibiting RnlA toxicity and thus plays two contrary roles in the regulation of RnlA-RnlB system.
      Title: RnlB Antitoxin of the Escherichia coli RnlA-RnlB Toxin-Antitoxin Module Requires RNase HI for Inhibition of RnlA Toxin Activity.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in regulation of growth NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in single-species biofilm formation NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of toxin-antitoxin complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    antitoxin RnlB

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2766984..2767355
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417120.2 antitoxin RnlB [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417120.2

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P52130
      Conserved Domains (1) summary
      pfam15933
      Location:14 → 112
      RnlB_antitoxin; Antitoxin to bacterial toxin RNase LS or RnlA
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.