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    CORO1C coronin 1C [ Gallus gallus (chicken) ]

    Gene ID: 416893, updated on 3-Dec-2024

    Summary

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    Official Symbol
    CORO1Cprovided by CGNC
    Official Full Name
    coronin 1Cprovided by CGNC
    Primary source
    CGNC:50369
    See related
    Ensembl:ENSGALG00010022497
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    coronin-1C
    Orthologs
    human mouse all
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    Genomic context

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    See CORO1C in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 15 NC_052546.1 (6549136..6587446, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 15 NC_052587.1 (6559648..6597962, complement)

    Chromosome 15 - NC_052546.1Genomic Context describing neighboring genes Neighboring gene iron-sulfur cluster assembly enzyme Neighboring gene transmembrane protein 119 Neighboring gene selectin P ligand Neighboring gene slingshot homolog 1 (Drosophila) Neighboring gene D-amino acid oxidase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A set of testis-specific novel genes collected from a collection of Korean Native Chicken ESTs. Shin JH, et al. Anim Genet, 2005 Aug. PMID 16026346
    2. A large database of chicken bursal ESTs as a resource for the analysis of vertebrate gene function. Abdrakhmanov I, et al. Genome Res, 2000 Dec. PMID 11116100, Free PMC Article
    3. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550
    4. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    coronin-1C
    Names
    coronin, actin binding protein, 1C

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001277868.3 → NP_001264797.2  coronin-1C isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1).
      Source sequence(s)
      JAENSK010000260
      UniProtKB/TrEMBL
      A0A8V0ZIE4
      Conserved Domains (2) summary
      sd00039
      Location:142 → 184
      7WD40; WD40 repeat [structural motif]
      cl25676
      Location:114 → 577
      WD40_4; Type of WD40 repeat

    2. NM_001277869.3 → NP_001264798.1  coronin-1C isoform 2

      See identical proteins and their annotated locations for NP_001264798.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame 5' exon and initiates translation at an alternate start codon compared to variant 1. The resulting protein (isoform 2) has a shorter N-terminus compared to isoform 1.
      Source sequence(s)
      JAENSK010000260
      UniProtKB/TrEMBL
      A0A8V0ZIE4, Q5ZI60
      Conserved Domains (2) summary
      sd00039
      Location:36 → 78
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:8 → 471
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052546.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      6549136..6587446 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046901147.1 → XP_046757103.1  coronin-1C isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZIE4, Q5ZI60
      Related
      ENSGALP00010033097.1, ENSGALT00010054763.1

    2. XM_046901146.1 → XP_046757102.1  coronin-1C isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZIE4, Q5ZI60

    3. XM_025155467.3 → XP_025011235.1  coronin-1C isoform X1

      UniProtKB/TrEMBL
      A0A1L1RWS8, A0A8V0ZIE4
      Related
      ENSGALP00010033090.1, ENSGALT00010054753.1
      Conserved Domains (2) summary
      sd00039
      Location:40 → 82
      7WD40; WD40 repeat [structural motif]
      cl25676
      Location:12 → 475
      WD40_4; Type of WD40 repeat

    4. XM_046901145.1 → XP_046757101.1  coronin-1C isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZIE4, Q5ZI60

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052587.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      6559648..6597962 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046928153.1 → XP_046784109.1  coronin-1C isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZIE4, Q5ZI60

    2. XM_046928152.1 → XP_046784108.1  coronin-1C isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZIE4, Q5ZI60

    3. XM_046928150.1 → XP_046784106.1  coronin-1C isoform X1

      UniProtKB/TrEMBL
      A0A1L1RWS8, A0A8V0ZIE4

    4. XM_046928151.1 → XP_046784107.1  coronin-1C isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZIE4, Q5ZI60

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001039265.1: Suppressed sequence

      Description
      NM_001039265.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials