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    col-129 Collagen triple helix repeat protein;Nematode cuticle collagen N-terminal domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 178155, updated on 9-Dec-2024

    Summary

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    Official Symbol
    col-129
    Official Full Name
    Collagen triple helix repeat protein;Nematode cuticle collagen N-terminal domain-containing protein
    Primary source
    WormBase:WBGene00000703
    Locus tag
    CELE_M18.1
    See related
    AllianceGenome:WB:WBGene00000703
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. Is expressed in hypodermis and intestine. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See col-129 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    2
    Sequence:
    Chromosome: IV; NC_003282.8 (12108734..12110439, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Monensin-resistant homolog 2 Neighboring gene Asparagine synthetase domain-containing protein Neighboring gene putative dynein light chain 2, cytoplasmic Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene expression profiling studies on Caenorhabditis elegans dystrophin mutants dys-1(cx-35) and dys-1(cx18). Towers PR, et al. Genomics, 2006 Nov. PMID 16962739
    2. Integration of behavioural tests and transcriptome sequencing of C. elegans reveals how the nematode responds to peanut shell biochar amendment. Li J, et al. Sci Total Environ, 2020 Mar 10. PMID 31972909
    3. The effects of different biochars on Caenorhabditis elegans and the underlying transcriptomic mechanisms. Chen Y, et al. PLoS One, 2023. PMID 37738276, Free PMC Article
    4. Direct and heterologous approaches to identify the LET-756/FGF interactome. Popovici C, et al. BMC Genomics, 2006 May 3. PMID 16672054, Free PMC Article
    5. Body stiffness is a mechanical property that facilitates contact-mediated mate recognition in Caenorhabditis elegans. Weng JW, et al. Curr Biol, 2023 Sep 11. PMID 37541249, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables structural constituent of cuticle IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Collagen triple helix repeat protein;Nematode cuticle collagen N-terminal domain-containing protein
    NP_001368475.1
    • Confirmed by transcript evidence
    NP_502297.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      12108734..12110439 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_069896.8 → NP_502297.1  Nematode cuticle collagen N-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_502297.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q21556
      Conserved Domains (2) summary
      pfam01391
      Location:189 → 269
      Collagen; Collagen triple helix repeat (20 copies)
      smart01088
      Location:6 → 58
      Col_cuticle_N; Nematode cuticle collagen N-terminal domain

    2. NM_001380478.1 → NP_001368475.1  Collagen triple helix repeat protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A061ADV7
      Conserved Domains (1) summary
      pfam01391
      Location:172 → 211
      Collagen; Collagen triple helix repeat (20 copies)
    Nucleotide Protein
    Heading Accession and Version

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