W09G3.6 RING-type domain-containing protein [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: W09G3.6
Official Full Name: RING-type domain-containing protein
Primary source: WormBase:WBGene00012369
Locus tag: CELE_W09G3.6
See related: AllianceGenome:WB:WBGene00012369
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to be involved in developmental pigmentation. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in Hermansky-Pudlak syndrome and Hermansky-Pudlak syndrome 5. Orthologous to human HPS5 (HPS5 biogenesis of lysosomal organelles complex 2 subunit 2). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See W09G3.6 in Genome Data Viewer

Location:: chromosome: I

Exon count:: 10

Sequence:: Chromosome: I; NC_003279.8 (13814756..13827988, complement)

Chromosome I - NC_003279.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

W09G3.1 (e-PCR)
- UniSTS:317541

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Process	Evidence Code	Pubs
involved_in developmental pigmentation	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: RING-type domain-containing protein

NP_001129796.1

Confirmed by transcript evidence

NP_493417.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003279.8 Reference assembly

Range

13814756..13827988 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_061016.8 → NP_493417.1 RING-type domain-containing protein [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_493417.1

Status: REVIEWED

UniProtKB/TrEMBL

Q95Q36

Conserved Domains (2) summary

sd00039
Location:99 → 134

7WD40; WD40 repeat [structural motif]

cl02567
Location:88 → 178

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
NM_001136324.4 → NP_001129796.1 RING-type domain-containing protein [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_001129796.1

Status: REVIEWED

UniProtKB/TrEMBL

B3WFY3

Conserved Domains (1) summary

cl17238
Location:5 → 29

RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain