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    Brca2 BRCA2, DNA repair associated [ Rattus norvegicus (Norway rat) ]

    Gene ID: 360254, updated on 9-Dec-2024

    Summary

    Official Symbol
    Brca2provided by RGD
    Official Full Name
    BRCA2, DNA repair associatedprovided by RGD
    Primary source
    RGD:2219
    See related
    EnsemblRapid:ENSRNOG00000001111 AllianceGenome:RGD:2219
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Enables single-stranded DNA binding activity. Involved in several processes, including homologous chromosome orientation in meiotic metaphase I; response to estradiol; and spermatogenesis. Predicted to be located in several cellular components, including centrosome; chromosome, telomeric region; and nuclear lumen. Predicted to be part of BRCA2-MAGE-D1 complex; DNA repair complex; and nuclear ubiquitin ligase complex. Predicted to be active in nucleus. Used to study atrophy of testis; cancer; cataract; infertility; and osteosarcoma. Biomarker of ductal carcinoma in situ and prostate cancer. Human ortholog(s) of this gene implicated in several diseases, including Fanconi anemia (multiple); esophagus squamous cell carcinoma; hereditary breast ovarian cancer syndrome; melanoma (multiple); and reproductive organ cancer (multiple). Orthologous to human BRCA2 (BRCA2 DNA repair associated). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Spleen (RPKM 67.6), Thymus (RPKM 61.2) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Brca2 in Genome Data Viewer
    Location:
    12p12
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (4895092..4939340)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (59492..103789)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (503660..544754)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene igE-binding protein-like Neighboring gene zygote arrest 1-like Neighboring gene U4 spliceosomal RNA Neighboring gene NEDD4 binding protein 2-like 1 Neighboring gene NEDD4 binding protein 2-like 2 Neighboring gene PDS5 cohesin associated factor B Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

    Bibliography

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables gamma-tubulin binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables gamma-tubulin binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables histone H3 acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables histone H3 acetyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables histone H4 acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables histone H4 acetyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    NOT enables histone acetyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables identical protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protease binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protease binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables single-stranded DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables single-stranded DNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in DNA damage response ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in DNA recombination IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within brain development ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within cell population proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cellular response to ionizing radiation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cellular response to ionizing radiation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cellular senescence IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within cellular senescence ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in centrosome duplication IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in centrosome duplication ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within chordate embryonic development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within chromosome organization ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within double-strand break repair ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in double-strand break repair ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in double-strand break repair via homologous recombination IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within double-strand break repair via homologous recombination ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in double-strand break repair via homologous recombination ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in double-strand break repair via homologous recombination ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in establishment of protein localization to telomere IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in establishment of protein localization to telomere ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in female gonad development IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within female gonad development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in hematopoietic stem cell proliferation IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within hematopoietic stem cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within hemopoiesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in homologous chromosome orientation in meiotic metaphase I IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in inner cell mass cell proliferation IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within inner cell mass cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within intrinsic apoptotic signaling pathway in response to DNA damage ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in male meiosis I IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within male meiosis I ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in male meiosis I ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in mammary gland development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in mitotic recombination-dependent replication fork processing IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in mitotic recombination-dependent replication fork processing ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in multicellular organism growth IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of mammary gland epithelial cell proliferation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of mammary gland epithelial cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in nucleotide-excision repair IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in nucleotide-excision repair ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in oocyte maturation IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within oocyte maturation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of DNA-templated transcription ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within positive regulation of mitotic cell cycle ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in regulation of cytokinesis IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within regulation of cytokinesis ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within replication fork processing ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to UV-C IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within response to UV-C ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to X-ray IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within response to X-ray ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to estradiol IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in response to gamma radiation IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within response to gamma radiation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to nutrient IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in spermatogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within spermatogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within stem cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in telomere maintenance via recombination IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in telomere maintenance via recombination ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    part_of BRCA2-MAGE-D1 complex IEA
    Inferred from Electronic Annotation
    more info
     
    part_of BRCA2-MAGE-D1 complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of DNA repair complex IEA
    Inferred from Electronic Annotation
    more info
     
    part_of DNA repair complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in centrosome ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in chromosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in chromosome, telomeric region IEA
    Inferred from Electronic Annotation
    more info
     
    located_in chromosome, telomeric region ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in lateral element IEA
    Inferred from Electronic Annotation
    more info
     
    located_in lateral element ISO
    Inferred from Sequence Orthology
    more info
     
    part_of nuclear ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
     
    part_of nuclear ubiquitin ligase complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    part_of protein-containing complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in secretory granule IEA
    Inferred from Electronic Annotation
    more info
     
    located_in secretory granule ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    breast cancer type 2 susceptibility protein homolog
    Names
    breast cancer 2, early onset
    breast cancer 2, mutation 1, University of Wisconsin-Madison
    breast cancer susceptibility protein 2
    fanconi anemia group D1 protein homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_031542.2NP_113730.2  breast cancer type 2 susceptibility protein homolog

      See identical proteins and their annotated locations for NP_113730.2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000012
      UniProtKB/Swiss-Prot
      O35923
      UniProtKB/TrEMBL
      Q66MH4
      Related
      ENSRNOP00000001475.4, ENSRNOT00000001475.9
      Conserved Domains (5) summary
      cd04494
      Location:27342982
      BRCA2DBD_OB2; BRCA2DBD_OB2: A subfamily of OB folds corresponding to the second OB fold (OB2) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous ...
      pfam00634
      Location:11981229
      BRCA2; BRCA2 repeat
      pfam09103
      Location:26002723
      BRCA-2_OB1; BRCA2, oligonucleotide/oligosaccharide-binding, domain 1
      pfam09104
      Location:29843113
      BRCA-2_OB3; BRCA2, oligonucleotide/oligosaccharide-binding, domain 3
      pfam09169
      Location:24112597
      BRCA-2_helical; BRCA2, helical

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      4895092..4939340
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039089540.2XP_038945468.1  breast cancer type 2 susceptibility protein homolog isoform X1

      UniProtKB/Swiss-Prot
      O35923
      Conserved Domains (5) summary
      cd04494
      Location:27343012
      BRCA2DBD_OB2; A subfamily of OB folds corresponding to the second OB fold (OB2) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous recombination-mediated ...
      pfam00634
      Location:11981228
      BRCA2; BRCA2 repeat
      pfam09103
      Location:26002723
      BRCA-2_OB1; BRCA2, oligonucleotide/oligosaccharide-binding, domain 1
      pfam09104
      Location:30123142
      BRCA-2_OB3; BRCA2, oligonucleotide/oligosaccharide-binding, domain 3
      pfam09169
      Location:24112597
      BRCA-2_helical; BRCA2, helical
    2. XM_039089543.2XP_038945471.1  breast cancer type 2 susceptibility protein homolog isoform X5

      UniProtKB/Swiss-Prot
      O35923
      Related
      ENSRNOP00000107212.1, ENSRNOT00000146025.1
      Conserved Domains (4) summary
      cd04494
      Location:27343012
      BRCA2DBD_OB2; A subfamily of OB folds corresponding to the second OB fold (OB2) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous recombination-mediated ...
      pfam00634
      Location:11981228
      BRCA2; BRCA2 repeat
      pfam09103
      Location:26002723
      BRCA-2_OB1; BRCA2, oligonucleotide/oligosaccharide-binding, domain 1
      pfam09169
      Location:24112597
      BRCA-2_helical; BRCA2, helical
    3. XM_039089542.2XP_038945470.1  breast cancer type 2 susceptibility protein homolog isoform X4

      UniProtKB/Swiss-Prot
      O35923
      Conserved Domains (4) summary
      cd04494
      Location:27343012
      BRCA2DBD_OB2; A subfamily of OB folds corresponding to the second OB fold (OB2) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous recombination-mediated ...
      pfam00634
      Location:11981228
      BRCA2; BRCA2 repeat
      pfam09103
      Location:26002723
      BRCA-2_OB1; BRCA2, oligonucleotide/oligosaccharide-binding, domain 1
      pfam09169
      Location:24112597
      BRCA-2_helical; BRCA2, helical
    4. XM_017598372.3XP_017453861.1  breast cancer type 2 susceptibility protein homolog isoform X2

      UniProtKB/Swiss-Prot
      O35923
      UniProtKB/TrEMBL
      Q66MH4
      Conserved Domains (5) summary
      cd04494
      Location:27342982
      BRCA2DBD_OB2; BRCA2DBD_OB2: A subfamily of OB folds corresponding to the second OB fold (OB2) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous ...
      pfam00634
      Location:11981229
      BRCA2; BRCA2 repeat
      pfam09103
      Location:26002723
      BRCA-2_OB1; BRCA2, oligonucleotide/oligosaccharide-binding, domain 1
      pfam09104
      Location:29843113
      BRCA-2_OB3; BRCA2, oligonucleotide/oligosaccharide-binding, domain 3
      pfam09169
      Location:24112597
      BRCA-2_helical; BRCA2, helical
    5. XM_039089541.2XP_038945469.1  breast cancer type 2 susceptibility protein homolog isoform X3

      UniProtKB/Swiss-Prot
      O35923
      Conserved Domains (5) summary
      cd04494
      Location:27343012
      BRCA2DBD_OB2; A subfamily of OB folds corresponding to the second OB fold (OB2) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous recombination-mediated ...
      pfam00634
      Location:11981228
      BRCA2; BRCA2 repeat
      pfam09103
      Location:26002723
      BRCA-2_OB1; BRCA2, oligonucleotide/oligosaccharide-binding, domain 1
      pfam09104
      Location:30123142
      BRCA-2_OB3; BRCA2, oligonucleotide/oligosaccharide-binding, domain 3
      pfam09169
      Location:24112597
      BRCA-2_helical; BRCA2, helical
    6. XM_039089544.2XP_038945472.1  breast cancer type 2 susceptibility protein homolog isoform X6

      Conserved Domains (1) summary
      pfam00634
      Location:11981228
      BRCA2; BRCA2 repeat

    RNA

    1. XR_005491644.2 RNA Sequence