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    CG32971 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 318271, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG32971provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0052971
    Locus tag
    Dmel_CG32971
    See related
    AllianceGenome:FB:FBgn0052971
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG32971
    Summary
    Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of mediator complex. Orthologous to human MED22 (mediator complex subunit 22). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG32971 in Genome Data Viewer
    Location:
    35A3-35A3; 2-50 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (14274821..14278002)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (14274821..14278002)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR44216 Neighboring gene long non-coding RNA:CR44729 Neighboring gene wing blister Neighboring gene long non-coding RNA:CR43639 Neighboring gene long non-coding RNA:CR43640

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Burst of young retrogenes and independent retrogene formation in mammals. Pan D, et al. PLoS One, 2009. PMID 19325906, Free PMC Article
    2. Single-cell RNA sequencing identifies eggplant as a regulator of germ cell development in Drosophila. Sun Z, et al. EMBO Rep, 2023 Oct 9. PMID 37603128, Free PMC Article
    3. Age-dependent chromosomal distribution of male-biased genes in Drosophila. Zhang YE, et al. Genome Res, 2010 Nov. PMID 20798392, Free PMC Article
    4. A cautionary note for retrocopy identification: DNA-based duplication of intron-containing genes significantly contributes to the origination of single exon genes. Zhang YE, et al. Bioinformatics, 2011 Jul 1. PMID 21551137, Free PMC Article
    5. Reproductive status alters transcriptomic response to infection in female Drosophila melanogaster. Short SM, et al. G3 (Bethesda), 2013 May 20. PMID 23550122, Free PMC Article

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of mediator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of mediator complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG32971-PA
    CG32971-PB
    CG32971-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      14274821..14278002
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001144351.3 → NP_001137823.1  uncharacterized protein Dmel_CG32971, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001137823.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q86BK9
      Conserved Domains (1) summary
      pfam06179
      Location:15 → 117
      Med22; Surfeit locus protein 5 subunit 22 of Mediator complex

    2. NM_001144352.3 → NP_001137824.1  uncharacterized protein Dmel_CG32971, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001137824.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q86BK9
      Conserved Domains (1) summary
      pfam06179
      Location:15 → 117
      Med22; Surfeit locus protein 5 subunit 22 of Mediator complex

    3. NM_176038.3 → NP_788052.1  uncharacterized protein Dmel_CG32971, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_788052.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q86BK9
      Related
      FBpp0080194
      Conserved Domains (1) summary
      pfam06179
      Location:15 → 117
      Med22; Surfeit locus protein 5 subunit 22 of Mediator complex
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q86BK9 Q86BK9

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