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    su(w[a]) suppressor of white-apricot [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 31054, updated on 9-Dec-2024

    Summary

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    Official Symbol
    su(w[a])provided by FlyBase
    Official Full Name
    suppressor of white-apricotprovided by FlyBase
    Primary source
    FLYBASE:FBgn0003638
    Locus tag
    Dmel_CG3019
    See related
    AllianceGenome:FB:FBgn0003638
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG3019; Dmel\CG3019; DmSWAP; EG:BACR7A4.10; su(w); su(wa); Su(w[a]); su(w[a])-1; su(w[a])-2; su-w; su[wa]; SWAP
    Summary
    Predicted to enable RNA binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Orthologous to human SFSWAP (splicing factor SWAP). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See su(w[a]) in Genome Data Viewer
    Location:
    1E1-1E1; 1-0.1 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (1012779..1046040)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (906812..940073)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene TfIIA-S-2 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Cell division cycle 45 Neighboring gene uncharacterized protein Neighboring gene Ribonuclease P/MRP subunit p21 Neighboring gene long non-coding RNA:CR44779 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RNA travel: tracks from DNA to cytoplasm. Rosbash M, et al. Cell, 1993 Nov 5. PMID 7693353
    2. Molecular organization and embryonic expression of the hedgehog gene involved in cell-cell communication in segmental patterning of Drosophila. Mohler J, et al. Development, 1992 Aug. PMID 1280560
    3. Analysis of autoregulation at the level of pre-mRNA splicing of the suppressor-of-white-apricot gene in Drosophila. Zachar Z, et al. Genetics, 1994 May. PMID 8056305, Free PMC Article
    4. Single-strand conformation polymorphism analysis coupled with stratified DNA sequencing reveals reduced sequence variation in the su(s) and su(wa) regions of the Drosophila melanogaster X chromosome. Aguadé M, et al. Proc Natl Acad Sci U S A, 1994 May 24. PMID 8197115, Free PMC Article
    5. Linkage disequilibria and the site frequency spectra in the su(s) and su(w(a)) regions of the Drosophila melanogaster X chromosome. Langley CH, et al. Genetics, 2000 Dec. PMID 11102378, Free PMC Article

    See all (93) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    mobile_element

    • Loc: 1022234-1022505 mobile_element_type = transposon:FB{}9
    • Loc: 1024762-1025624 mobile_element_type = transposon:Rt1c{}10
    • Loc: 1033407-1040982 mobile_element_type = transposon:412{}12

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in mRNA 5'-splice site recognition IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    suppressor of white-apricot
    Names
    CG3019-PA
    CG3019-PB
    CG3019-PC
    CG3019-PG
    CG3019-PI
    CG3019-PJ
    CG3019-PM
    su(w[a])-PA
    su(w[a])-PB
    su(w[a])-PC
    su(w[a])-PG
    su(w[a])-PI
    su(w[a])-PJ
    su(w[a])-PM
    suppressor of apricot

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      1012779..1046040
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001201591.3 → NP_001188520.1  suppressor of white-apricot, isoform G [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001188520.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9MS02
      Conserved Domains (1) summary
      smart00648
      Location:17 → 69
      SWAP; Suppressor-of-White-APricot splicing regulator

    2. NM_206600.3 → NP_996323.1  suppressor of white-apricot, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_996323.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A4V3U2
      Conserved Domains (1) summary
      pfam09750
      Location:60 → 98
      DRY_EERY; Alternative splicing regulator

    3. NM_206601.3 → NP_996324.1  suppressor of white-apricot, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_996324.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A4V3U2
      Conserved Domains (1) summary
      pfam09750
      Location:60 → 98
      DRY_EERY; Alternative splicing regulator

    4. NM_001272187.2 → NP_001259116.1  suppressor of white-apricot, isoform M [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001259116.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PDF8
      Conserved Domains (1) summary
      pfam09750
      Location:60 → 158
      DRY_EERY; Alternative splicing regulator

    5. NM_001258529.2 → NP_001245458.1  suppressor of white-apricot, isoform J [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001245458.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9NFQ2
      Conserved Domains (1) summary
      pfam09750
      Location:60 → 156
      DRY_EERY; Alternative splicing regulator

    6. NM_001258528.2 → NP_001245457.1  suppressor of white-apricot, isoform I [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001245457.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9NDH9
      Conserved Domains (1) summary
      pfam09750
      Location:60 → 150
      DRY_EERY; Alternative splicing regulator

    7. NM_057408.6 → NP_476756.2  suppressor of white-apricot, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_476756.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P12297, Q24543, Q7KW21, Q8MSS2, Q9I7D2, Q9TVZ2
      Related
      FBpp0070171
      Conserved Domains (2) summary
      smart00648
      Location:232 → 284
      SWAP; Suppressor-of-White-APricot splicing regulator
      pfam09750
      Location:60 → 180
      DRY_EERY; Alternative splicing regulator
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A4V3U2 A4V3U2
    M9MS02 M9MS02
    M9NDH9 M9NDH9
    M9NFQ2 M9NFQ2
    M9PDF8 M9PDF8
    P12297.3 P12297

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