NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_027815.1 RefSeqGene
- Range
-
5093..36403
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001064.4 → NP_001055.1 transketolase isoform 1
See identical proteins and their annotated locations for NP_001055.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) differs in the 3' UTR, compared to variant 2. Variants 1 and 2 encode the same isoform (1).
- Source sequence(s)
-
AC097015, BC009970, BC024026, CA421169, DB503248, L12711
- Consensus CDS
-
CCDS2871.1
- UniProtKB/Swiss-Prot
- A8K089, B4DE31, E7EPA7, P29401, Q8TBA3, Q96HH3
- UniProtKB/TrEMBL
- A0A024R2Z9, Q53EM5, V9HWD9
- Related
- ENSP00000417773.1, ENST00000462138.6
- Conserved Domains (1) summary
-
- PRK05899
Location:8 → 620
- PRK05899; transketolase; Reviewed
-
NM_001135055.3 → NP_001128527.1 transketolase isoform 1
See identical proteins and their annotated locations for NP_001128527.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) represents the longest transcript. Variants 1 and 2 encode the same isoform (1).
- Source sequence(s)
-
AC097015, BE504944, BX647248, DB503248
- Consensus CDS
-
CCDS2871.1
- UniProtKB/Swiss-Prot
- A8K089, B4DE31, E7EPA7, P29401, Q8TBA3, Q96HH3
- UniProtKB/TrEMBL
- A0A024R2Z9, Q53EM5, V9HWD9
- Related
- ENSP00000405455.2, ENST00000423525.6
- Conserved Domains (1) summary
-
- PRK05899
Location:8 → 620
- PRK05899; transketolase; Reviewed
-
NM_001258028.2 → NP_001244957.1 transketolase isoform 2
See identical proteins and their annotated locations for NP_001244957.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) includes an alternate in-frame exon in the coding region, compared to variant 1. The encoded isoform (2) is longer than isoform 1.
- Source sequence(s)
-
AC097015, AK293438, BC008615, CA421169
- Consensus CDS
-
CCDS58834.1
- UniProtKB/TrEMBL
-
Q53EM5
- Related
- ENSP00000391481.1, ENST00000423516.5
- Conserved Domains (4) summary
-
- cd07033
Location:327 → 482
- TPP_PYR_DXS_TK_like; Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins
- PRK05899
Location:8 → 628
- PRK05899; transketolase; Reviewed
- cd02012
Location:20 → 279
- TPP_TK; Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the ...
- pfam02780
Location:500 → 620
- Transketolase_C; Transketolase, C-terminal domain
RNA
-
NR_047580.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) uses an alternate splice site compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC097015, AK301231, BC008615, CA421169
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000003.12 Reference GRCh38.p14 Primary Assembly
- Range
-
53224712..53256022 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011534054.2 → XP_011532356.1 transketolase isoform X1
See identical proteins and their annotated locations for XP_011532356.1
- UniProtKB/TrEMBL
-
Q53EM5
- Conserved Domains (4) summary
-
- cd07033
Location:327 → 482
- TPP_PYR_DXS_TK_like; Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins
- PRK05899
Location:8 → 628
- PRK05899; transketolase; Reviewed
- cd02012
Location:20 → 279
- TPP_TK; Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the ...
- pfam02780
Location:500 → 620
- Transketolase_C; Transketolase, C-terminal domain
Alternate T2T-CHM13v2.0
Genomic
-
NC_060927.1 Alternate T2T-CHM13v2.0
- Range
-
53257622..53288998 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054347704.1 → XP_054203679.1 transketolase isoform X1
- UniProtKB/TrEMBL
-
Q53EM5
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001135056.1: Suppressed sequence
- Description
- NM_001135056.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript, which aligns with non-consensus splice sites.
-
NR_047579.1: Suppressed sequence
- Description
- NR_047579.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.