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    col-52 Collagen triple helix repeat protein [ Caenorhabditis elegans ]

    Gene ID: 183885, updated on 9-Dec-2024

    Summary

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    Official Symbol
    col-52
    Official Full Name
    Collagen triple helix repeat protein
    Primary source
    WormBase:WBGene00000629
    Locus tag
    CELE_D1007.2
    See related
    AllianceGenome:WB:WBGene00000629
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See col-52 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    6
    Sequence:
    Chromosome: I; NC_003279.8 (4571192..4575038, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Intrinsically Disordered Protein, expressed in Pharynx Neighboring gene Homeobox protein ceh-17 Neighboring gene Uncharacterized protein Neighboring gene Secreted protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Collagen triple helix repeat protein
    NP_491394.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      4571192..4575038 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_058993.3 → NP_491394.2  Collagen triple helix repeat protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_491394.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      O01873
      Conserved Domains (1) summary
      pfam01391
      Location:180 → 237
      Collagen; Collagen triple helix repeat (20 copies)
    Nucleotide Protein
    Heading Accession and Version

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