Gm45871 predicted gene 45871 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Gm45871provided by MGI
Official Full Name: predicted gene 45871provided by MGI
Primary source: MGI:MGI:5804986
See related: Ensembl:ENSMUSG00000110277 AllianceGenome:MGI:5804986
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary: Predicted to enable DNA binding activity; DNA-binding transcription repressor activity, RNA polymerase II-specific; and protein-macromolecule adaptor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to several human genes including ZNF234 (zinc finger protein 234); ZNF254 (zinc finger protein 254); and ZNF28 (zinc finger protein 28). [provided by Alliance of Genome Resources, Jan 2025]
Expression: Ubiquitous expression in bladder adult (RPKM 1.8), large intestine adult (RPKM 1.5) and 26 other tissues See more
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Genomic context

Location:: 18 E4; 18

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	18	NC_000084.7 (90597884..90613788)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	18	NC_000084.6 (90579760..90593724)

Chromosome 18 - NC_000084.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info
enables DNA-binding transcription repressor activity, RNA polymerase II-specific	ISO Inferred from Sequence Orthology more info
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables damaged DNA binding	ISO Inferred from Sequence Orthology more info
enables protein-macromolecule adaptor activity	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in nucleoplasm	ISO Inferred from Sequence Orthology more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: uncharacterized protein LOC108168395

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001362365.1 → NP_001349294.1 uncharacterized protein LOC108168395

Status: VALIDATED

Source sequence(s)

AC165266, BC062254

Consensus CDS

CCDS89298.1

UniProtKB/TrEMBL

A0A1B0GRI9

Related

ENSMUSP00000147542.2, ENSMUST00000211710.2

Conserved Domains (3) summary

COG5048
Location:116 → 538

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:134 → 154

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam01352
Location:4 → 44

KRAB; KRAB box

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

NC_000084.7 Reference GRCm39 C57BL/6J

Range

90597884..90613788

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_030250271.2 → XP_030106131.1 uncharacterized protein LOC108168395 isoform X1

Conserved Domains (2) summary

COG5048
Location:79 → 501

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:97 → 117

ZF_C2H2; C2H2 Zn finger [structural motif]