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    COL3A1 collagen type III alpha 1 chain [ Gallus gallus (chicken) ]

    Gene ID: 396340, updated on 17-Aug-2024

    Summary

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    Official Symbol
    COL3A1provided by CGNC
    Official Full Name
    collagen type III alpha 1 chainprovided by CGNC
    Primary source
    CGNC:49759
    See related
    Ensembl:ENSGALG00010013170
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    collagen
    Orthologs
    human mouse all
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    Genomic context

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    See COL3A1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    68
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (671206..805182, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (610035..744110, complement)

    Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 75 Neighboring gene collagen type V alpha 2 chain Neighboring gene uncharacterized LOC121111311 Neighboring gene uncharacterized LOC121111310 Neighboring gene GULP PTB domain containing engulfment adaptor 1 Neighboring gene uncharacterized LOC121111312 Neighboring gene tissue factor pathway inhibitor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An alternative transcript of the chick type III collagen gene that does not encode type III collagen. Nah HD, et al. J Biol Chem, 1994 Jun 10. PMID 8206952
    2. A conserved nucleotide sequence, coding for a segment of the C-propeptide, is found at the same location in different collagen genes. Yamada Y, et al. Nucleic Acids Res, 1983 May 11. PMID 6856474, Free PMC Article
    3. Conservation of the sizes for one but not another class of exons in two chick collagen genes. Yamada Y, et al. Nature, 1984 Jul 26-Aug 1. PMID 6547770
    4. Isolation and characterization of a genomic clone encoding chick alpha 1 type III collagen. Yamada Y, et al. J Biol Chem, 1983 Mar 10. PMID 6298201
    5. A uniquely conserved regulatory signal is found around the translation initiation site in three different collagen genes. Yamada Y, et al. J Biol Chem, 1983 Dec 25. PMID 6689169

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    collagen alpha-1(III) chain
    Names
    alpha-1 type III collagen
    collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)
    type III collagen

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_205380.3 → NP_990711.2  collagen alpha-1(III) chain precursor

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000235
      UniProtKB/TrEMBL
      A0A1D5PE57
      Related
      ENSGALP00010018468.1, ENSGALT00010031600.1
      Conserved Domains (3) summary
      pfam01391
      Location:956 → 1015
      Collagen; Collagen triple helix repeat (20 copies)
      pfam00093
      Location:31 → 87
      VWC; von Willebrand factor type C domain
      pfam01410
      Location:1227 → 1459
      COLFI; Fibrillar collagen C-terminal domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      671206..805182 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046943515.1 → XP_046799471.1  collagen alpha-1(III) chain isoform X1

    2. XM_046943518.1 → XP_046799474.1  collagen alpha-1(III) chain isoform X1

    3. XM_046943514.1 → XP_046799470.1  collagen alpha-1(III) chain isoform X1

    4. XM_046943507.1 → XP_046799463.1  collagen alpha-1(III) chain isoform X1

    5. XM_040703365.2 → XP_040559299.1  collagen alpha-1(III) chain isoform X1

      Conserved Domains (3) summary
      pfam00093
      Location:13 → 69
      VWC; von Willebrand factor type C domain
      pfam01391
      Location:941 → 997
      Collagen; Collagen triple helix repeat (20 copies)
      pfam01410
      Location:1209 → 1441
      COLFI; Fibrillar collagen C-terminal domain

    6. XM_040703363.2 → XP_040559297.1  collagen alpha-1(III) chain isoform X1

      Conserved Domains (3) summary
      pfam00093
      Location:13 → 69
      VWC; von Willebrand factor type C domain
      pfam01391
      Location:941 → 997
      Collagen; Collagen triple helix repeat (20 copies)
      pfam01410
      Location:1209 → 1441
      COLFI; Fibrillar collagen C-terminal domain

    7. XM_046943512.1 → XP_046799468.1  collagen alpha-1(III) chain isoform X1

    8. XM_046943509.1 → XP_046799465.1  collagen alpha-1(III) chain isoform X1

    9. XM_046943511.1 → XP_046799467.1  collagen alpha-1(III) chain isoform X1

    10. XM_046943510.1 → XP_046799466.1  collagen alpha-1(III) chain isoform X1

    11. XM_046943508.1 → XP_046799464.1  collagen alpha-1(III) chain isoform X1

    12. XM_046943519.1 → XP_046799475.1  collagen alpha-1(III) chain isoform X3

    13. XM_046943516.1 → XP_046799472.1  collagen alpha-1(III) chain isoform X1

    14. XM_046943503.1 → XP_046799459.1  collagen alpha-1(III) chain isoform X1

    15. XM_046943504.1 → XP_046799460.1  collagen alpha-1(III) chain isoform X1

    16. XM_046943506.1 → XP_046799462.1  collagen alpha-1(III) chain isoform X1

    17. XM_046943505.1 → XP_046799461.1  collagen alpha-1(III) chain isoform X1

    18. XM_040703364.2 → XP_040559298.1  collagen alpha-1(III) chain isoform X1

      Conserved Domains (3) summary
      pfam00093
      Location:13 → 69
      VWC; von Willebrand factor type C domain
      pfam01391
      Location:941 → 997
      Collagen; Collagen triple helix repeat (20 copies)
      pfam01410
      Location:1209 → 1441
      COLFI; Fibrillar collagen C-terminal domain

    19. XM_046943513.1 → XP_046799469.1  collagen alpha-1(III) chain isoform X1

    20. XM_040703362.2 → XP_040559296.1  collagen alpha-1(III) chain isoform X1

      Conserved Domains (3) summary
      pfam00093
      Location:13 → 69
      VWC; von Willebrand factor type C domain
      pfam01391
      Location:941 → 997
      Collagen; Collagen triple helix repeat (20 copies)
      pfam01410
      Location:1209 → 1441
      COLFI; Fibrillar collagen C-terminal domain

    21. XM_046943502.1 → XP_046799458.1  collagen alpha-1(III) chain isoform X1

    22. XM_015289138.3 → XP_015144624.1  collagen alpha-1(III) chain isoform X1

      Conserved Domains (3) summary
      pfam00093
      Location:13 → 69
      VWC; von Willebrand factor type C domain
      pfam01391
      Location:941 → 997
      Collagen; Collagen triple helix repeat (20 copies)
      pfam01410
      Location:1209 → 1441
      COLFI; Fibrillar collagen C-terminal domain

    23. XM_046943517.1 → XP_046799473.1  collagen alpha-1(III) chain isoform X1

    24. XM_025152154.3 → XP_025007922.1  collagen alpha-1(III) chain isoform X2

      UniProtKB/TrEMBL
      A0A8V0YQR3
      Related
      ENSGALP00010018512.1, ENSGALT00010031648.1
      Conserved Domains (3) summary
      pfam01391
      Location:931 → 990
      Collagen; Collagen triple helix repeat (20 copies)
      pfam00093
      Location:31 → 87
      VWC; von Willebrand factor type C domain
      pfam01410
      Location:1202 → 1434
      COLFI; Fibrillar collagen C-terminal domain

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      610035..744110 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046921179.1 → XP_046777135.1  collagen alpha-1(III) chain isoform X1

    2. XM_046921182.1 → XP_046777138.1  collagen alpha-1(III) chain isoform X1

    3. XM_046921178.1 → XP_046777134.1  collagen alpha-1(III) chain isoform X1

    4. XM_046921170.1 → XP_046777126.1  collagen alpha-1(III) chain isoform X1

    5. XM_046921177.1 → XP_046777133.1  collagen alpha-1(III) chain isoform X1

    6. XM_046921163.1 → XP_046777119.1  collagen alpha-1(III) chain isoform X1

    7. XM_046921167.1 → XP_046777123.1  collagen alpha-1(III) chain isoform X1

    8. XM_046921166.1 → XP_046777122.1  collagen alpha-1(III) chain isoform X1

    9. XM_046921164.1 → XP_046777120.1  collagen alpha-1(III) chain isoform X1

    10. XM_046921176.1 → XP_046777132.1  collagen alpha-1(III) chain isoform X1

    11. XM_046921171.1 → XP_046777127.1  collagen alpha-1(III) chain isoform X1

    12. XM_046921175.1 → XP_046777131.1  collagen alpha-1(III) chain isoform X1

    13. XM_046921172.1 → XP_046777128.1  collagen alpha-1(III) chain isoform X1

    14. XM_046921174.1 → XP_046777130.1  collagen alpha-1(III) chain isoform X1

    15. XM_046921173.1 → XP_046777129.1  collagen alpha-1(III) chain isoform X1

    16. XM_046921169.1 → XP_046777125.1  collagen alpha-1(III) chain isoform X1

    17. XM_046921185.1 → XP_046777141.1  collagen alpha-1(III) chain isoform X3

    18. XM_046921180.1 → XP_046777136.1  collagen alpha-1(III) chain isoform X1

    19. XM_046921161.1 → XP_046777117.1  collagen alpha-1(III) chain isoform X1

    20. XM_046921165.1 → XP_046777121.1  collagen alpha-1(III) chain isoform X1

    21. XM_046921168.1 → XP_046777124.1  collagen alpha-1(III) chain isoform X1

    22. XM_046921162.1 → XP_046777118.1  collagen alpha-1(III) chain isoform X1

    23. XM_046921181.1 → XP_046777137.1  collagen alpha-1(III) chain isoform X1

    24. XM_046921184.1 → XP_046777140.1  collagen alpha-1(III) chain isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P12105.2 GenPept UniProtKB/Swiss-Prot:P12105

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