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    Ribosomal RNA processing Brix domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821942, updated on 18-Sep-2024

    Summary

    Official Full Name
    Ribosomal RNA processing Brix domain protein
    Primary source
    TAIR:AT3G23620
    Locus tag
    AT3G23620
    See related
    Araport:AT3G23620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (8480025..8482222)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene dual specificity protein phosphatase 1 Neighboring gene isopentenyltransferase 7 Neighboring gene ncRNA Neighboring gene ncRNA

    Interactions

    General gene information

    NM_113266.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding PubMed 
    enables rRNA binding PubMed 
    Component Evidence Code Pubs
    NOT located_in cytosol PubMed 
    located_in nucleolus PubMed 
    located_in nucleolus PubMed 
    located_in nucleus  

    General protein information

    Preferred Names
    Ribosomal RNA processing Brix domain protein
    NP_566734.1
    • Ribosomal RNA processing Brix domain protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 435 Blast hits to 425 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 138; Plants - 54; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8480025..8482222
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113266.4 → NP_566734.1  Ribosomal RNA processing Brix domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566734.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LCK0, Q9LUG5
      UniProtKB/TrEMBL
      A0A178VDC5, A0A5S9XEY1, A0A7G2EKV3
      Conserved Domains (1) summary
      cl00935
      Location:1 → 291
      Brix; Brix domain
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