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    LOC100360933 cDNA sequence BC048679-like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100360933, updated on 17-Aug-2024

    Summary

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    Symbol
    LOC100360933provided by RGD
    Full Name
    cDNA sequence BC048679-likeprovided by RGD
    Primary source
    RGD:2321127
    See related
    EnsemblRapid:ENSRNOG00000036981 AllianceGenome:RGD:2321127
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Uterus (RPKM 11.7), Testes (RPKM 4.9) and 3 other tissues See more
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    Genomic context

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    See LOC100360933 in Genome Data Viewer
    Location:
    1q31
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (144854864..144858668, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (135445623..135449427, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (143316233..143321316, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene cytoplasmic polyadenylation element binding protein 1 Neighboring gene uncharacterized LOC134483748 Neighboring gene adaptor related protein complex 3 subunit beta 2 Neighboring gene uncharacterized LOC102555928 Neighboring gene small Cajal body-specific RNA 15 Neighboring gene small nucleolar RNA SNORA76 Neighboring gene fibronectin type III and SPRY domain containing 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC100360933

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001193275.1 → NP_001180204.1  uncharacterized protein LOC100360933

      See identical proteins and their annotated locations for NP_001180204.1

      Status: PREDICTED

      Source sequence(s)
      CH473980
      UniProtKB/TrEMBL
      A0A8I6AEY1, A6JCG2, A6JCG3, D4ABH2
      Related
      ENSRNOP00000052476.3, ENSRNOT00000055614.4
      Conserved Domains (1) summary
      cl21534
      Location:43 → 90
      NLPC_P60; NlpC/P60 family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      144854864..144858668 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039101953.2 → XP_038957881.1  uncharacterized protein LOC100360933 isoform X1

      UniProtKB/TrEMBL
      A0A8I6AEY1, A6JCG2, A6JCG3, D4ABH2
      Related
      ENSRNOP00000091080.1, ENSRNOT00000094829.2
      Conserved Domains (1) summary
      cl21534
      Location:43 → 90
      NLPC_P60; NlpC/P60 family

    2. XM_039102004.2 → XP_038957932.1  uncharacterized protein LOC100360933 isoform X2

      UniProtKB/TrEMBL
      A6JCG2, A6JCG4, D4ABH2
      Conserved Domains (1) summary
      cl21534
      Location:14 → 61
      NLPC_P60; NlpC/P60 family
    Nucleotide Protein Strain
    Heading Accession and Version

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