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    FERMT1 fermitin family member 1 [ Gallus gallus (chicken) ]

    Gene ID: 416727, updated on 3-Dec-2024

    Summary

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    Official Symbol
    FERMT1provided by CGNC
    Official Full Name
    fermitin family member 1provided by CGNC
    Primary source
    CGNC:6699
    See related
    Ensembl:ENSGALG00010018512
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    C20orf42
    Orthologs
    human mouse all
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    Genomic context

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    See FERMT1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (14990187..15011998)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (14904735..14927258)

    Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene bone morphogenetic protein 2 Neighboring gene uncharacterized LOC121110386 Neighboring gene uncharacterized LOC124417872 Neighboring gene leucine rich repeat neuronal 4 Neighboring gene family with sequence similarity 161 member A Neighboring gene chaperonin containing TCP1 subunit 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables integrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-matrix adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in integrin-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in focal adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    fermitin family homolog 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      14990187..15011998
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040698211.2 → XP_040554145.1  fermitin family homolog 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z6Y7
      Conserved Domains (6) summary
      smart00295
      Location:250 → 337
      B41; Band 4.1 homologues
      cd01237
      Location:370 → 494
      PH_fermitin; Fermitin family pleckstrin homology (PH) domain
      cd13205
      Location:564 → 655
      FERM_C_fermitin; FERM domain C-lobe of the Fermitin family
      cd17180
      Location:11 → 94
      FERM_F0_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F0 sub-domain, found in kindlin-1 (KIND1)
      cd17183
      Location:95 → 275
      FERM_F1_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in kindlin-1 (KIND1)
      pfam00373
      Location:526 → 570
      FERM_M; FERM central domain

    2. XM_046939529.1 → XP_046795485.1  fermitin family homolog 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z6Y7

    3. XM_025148982.3 → XP_025004750.1  fermitin family homolog 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z6Y7
      Conserved Domains (6) summary
      smart00295
      Location:250 → 337
      B41; Band 4.1 homologues
      cd01237
      Location:370 → 494
      PH_fermitin; Fermitin family pleckstrin homology (PH) domain
      cd13205
      Location:564 → 655
      FERM_C_fermitin; FERM domain C-lobe of the Fermitin family
      cd17180
      Location:11 → 94
      FERM_F0_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F0 sub-domain, found in kindlin-1 (KIND1)
      cd17183
      Location:95 → 275
      FERM_F1_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in kindlin-1 (KIND1)
      pfam00373
      Location:526 → 570
      FERM_M; FERM central domain

    4. XM_415024.8 → XP_415024.2  fermitin family homolog 1 isoform X2

      See identical proteins and their annotated locations for XP_415024.2

      UniProtKB/TrEMBL
      A0A8V0Z6Y7
      Related
      ENSGALP00010026713.1, ENSGALT00010044791.1
      Conserved Domains (6) summary
      smart00295
      Location:250 → 337
      B41; Band 4.1 homologues
      cd01237
      Location:370 → 494
      PH_fermitin; Fermitin family pleckstrin homology (PH) domain
      cd13205
      Location:564 → 655
      FERM_C_fermitin; FERM domain C-lobe of the Fermitin family
      cd17180
      Location:11 → 94
      FERM_F0_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F0 sub-domain, found in kindlin-1 (KIND1)
      cd17183
      Location:95 → 275
      FERM_F1_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in kindlin-1 (KIND1)
      pfam00373
      Location:526 → 570
      FERM_M; FERM central domain

    5. XM_046939530.1 → XP_046795486.1  fermitin family homolog 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z6Y7

    6. XM_004935248.5 → XP_004935305.1  fermitin family homolog 1 isoform X2

      See identical proteins and their annotated locations for XP_004935305.1

      UniProtKB/TrEMBL
      A0A8V0Z6Y7
      Conserved Domains (6) summary
      smart00295
      Location:250 → 337
      B41; Band 4.1 homologues
      cd01237
      Location:370 → 494
      PH_fermitin; Fermitin family pleckstrin homology (PH) domain
      cd13205
      Location:564 → 655
      FERM_C_fermitin; FERM domain C-lobe of the Fermitin family
      cd17180
      Location:11 → 94
      FERM_F0_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F0 sub-domain, found in kindlin-1 (KIND1)
      cd17183
      Location:95 → 275
      FERM_F1_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in kindlin-1 (KIND1)
      pfam00373
      Location:526 → 570
      FERM_M; FERM central domain

    7. XM_046939528.1 → XP_046795484.1  fermitin family homolog 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z6Y7

    8. XM_046939531.1 → XP_046795487.1  fermitin family homolog 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z6Y7

    RNA

    1. XR_005858777.2 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      14904735..14927258
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040668039.2 → XP_040523973.1  fermitin family homolog 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z6Y7
      Conserved Domains (5) summary
      smart00295
      Location:250 → 337
      B41; Band 4.1 homologues
      cd01237
      Location:370 → 494
      PH_fermitin; Fermitin family pleckstrin homology (PH) domain
      cd13205
      Location:564 → 655
      FERM_C_fermitin; FERM domain C-lobe of the Fermitin family
      cd17180
      Location:11 → 94
      FERM_F0_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F0 sub-domain, found in kindlin-1 (KIND1)
      cd17183
      Location:95 → 275
      FERM_F1_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in kindlin-1 (KIND1)

    2. XM_046915033.1 → XP_046770989.1  fermitin family homolog 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z6Y7

    3. XM_040668040.2 → XP_040523974.1  fermitin family homolog 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z6Y7
      Conserved Domains (5) summary
      smart00295
      Location:250 → 337
      B41; Band 4.1 homologues
      cd01237
      Location:370 → 494
      PH_fermitin; Fermitin family pleckstrin homology (PH) domain
      cd13205
      Location:564 → 655
      FERM_C_fermitin; FERM domain C-lobe of the Fermitin family
      cd17180
      Location:11 → 94
      FERM_F0_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F0 sub-domain, found in kindlin-1 (KIND1)
      cd17183
      Location:95 → 275
      FERM_F1_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in kindlin-1 (KIND1)

    4. XM_040668041.2 → XP_040523975.1  fermitin family homolog 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z6Y7
      Conserved Domains (5) summary
      smart00295
      Location:250 → 337
      B41; Band 4.1 homologues
      cd01237
      Location:370 → 494
      PH_fermitin; Fermitin family pleckstrin homology (PH) domain
      cd13205
      Location:564 → 655
      FERM_C_fermitin; FERM domain C-lobe of the Fermitin family
      cd17180
      Location:11 → 94
      FERM_F0_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F0 sub-domain, found in kindlin-1 (KIND1)
      cd17183
      Location:95 → 275
      FERM_F1_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in kindlin-1 (KIND1)

    5. XM_046915034.1 → XP_046770990.1  fermitin family homolog 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z6Y7

    6. XM_040668038.2 → XP_040523972.1  fermitin family homolog 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z6Y7
      Conserved Domains (5) summary
      smart00295
      Location:250 → 337
      B41; Band 4.1 homologues
      cd01237
      Location:370 → 494
      PH_fermitin; Fermitin family pleckstrin homology (PH) domain
      cd13205
      Location:564 → 655
      FERM_C_fermitin; FERM domain C-lobe of the Fermitin family
      cd17180
      Location:11 → 94
      FERM_F0_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F0 sub-domain, found in kindlin-1 (KIND1)
      cd17183
      Location:95 → 275
      FERM_F1_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in kindlin-1 (KIND1)

    7. XM_046915032.1 → XP_046770988.1  fermitin family homolog 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z6Y7

    8. XM_046915035.1 → XP_046770991.1  fermitin family homolog 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z6Y7
    Nucleotide Protein Strain
    Heading Accession and Version

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