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    SETX senataxin [ Gallus gallus (chicken) ]

    Gene ID: 417170, updated on 3-Dec-2024

    Summary

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    Symbol
    SETXprovided by CGNC
    Full Name
    senataxinprovided by CGNC
    Primary source
    CGNC:2674
    See related
    Ensembl:ENSGALG00010028771
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    ALS4
    Orthologs
    human mouse all
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    Genomic context

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    See SETX in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 17 NC_052548.1 (7095194..7123964, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 17 NC_052589.1 (6507096..6535830, complement)

    Chromosome 17 - NC_052548.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101751924 Neighboring gene netrin G2 Neighboring gene uncharacterized LOC107052210 Neighboring gene uncharacterized LOC121107109 Neighboring gene transcription termination factor 1 Neighboring gene cilia and flagella associated protein 77

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription termination site sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in termination of RNA polymerase II transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable helicase senataxin
    Names
    amyotrophic lateral sclerosis 4
    XP_004945969.2
    XP_040541967.1
    XP_046757827.1
    XP_046785012.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052548.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      7095194..7123964 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004945912.5 → XP_004945969.2  probable helicase senataxin isoform X2

      UniProtKB/TrEMBL
      A0A8V1AFJ7
      Conserved Domains (2) summary
      TIGR00376
      Location:1952 → 2541
      TIGR00376; DNA helicase, putative
      cd18042
      Location:2043 → 2366
      DEXXQc_SETX; DEXXQ-box helicase domain of SETX

    2. XM_046901871.1 → XP_046757827.1  probable helicase senataxin isoform X1

      UniProtKB/TrEMBL
      A0A8V1AFJ7
      Related
      ENSGALP00010042884.1, ENSGALT00010069623.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052589.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      6507096..6535830 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040686033.2 → XP_040541967.1  probable helicase senataxin isoform X2

      UniProtKB/TrEMBL
      A0A8V1AFJ7
      Conserved Domains (2) summary
      TIGR00376
      Location:1952 → 2541
      TIGR00376; DNA helicase, putative
      cd18042
      Location:2043 → 2366
      DEXXQc_SETX; DEXXQ-box helicase domain of SETX

    2. XM_046929056.1 → XP_046785012.1  probable helicase senataxin isoform X1

      UniProtKB/TrEMBL
      A0A8V1AFJ7
    Nucleotide Protein
    Heading Accession and Version

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