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    Tex55 testis expressed 55 [ Mus musculus (house mouse) ]

    Gene ID: 74663, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Tex55provided by MGI
    Official Full Name
    testis expressed 55provided by MGI
    Primary source
    MGI:MGI:1921913
    See related
    Ensembl:ENSMUSG00000022798 AllianceGenome:MGI:1921913
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    TSCPA; 4930435E12Rik
    Summary
    Located in nucleus. Is expressed in ovary and testis. Orthologous to human TEX55 (testis expressed 55). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 28.2) See more
    Orthologs
    human all
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    Genomic context

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    See Tex55 in Genome Data Viewer
    Location:
    16 26.87 cM; 16 B4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (38632566..38649134, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (38812204..38828772, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4 Neighboring gene RNA binding motif protein 39 pseudogene Neighboring gene uroplakin 1B Neighboring gene STARR-seq mESC enhancer starr_40835 Neighboring gene STARR-seq mESC enhancer starr_40836 Neighboring gene predicted gene 15802 Neighboring gene immunoglobulin superfamily, member 11 Neighboring gene predicted gene, 22500

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Tex55 encodes a conserved putative A-kinase anchoring protein dispensable for male fertility in the mouse. Jamin SP, et al. Biol Reprod, 2021 Apr 1. PMID 33458765
    2. Expression profile of a novel germ cell-specific gene, TSCPA, in mice and human. Yu Z, et al. J Huazhong Univ Sci Technolog Med Sci, 2009 Oct. PMID 19821082
    3. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Tex55 encodes a conserved putative A-kinase anchoring protein dispensable for male fertility in the mouse.
      Title: Tex55 encodes a conserved putative A-kinase anchoring protein dispensable for male fertility in the mouse.
    2. TSCPA was expressed specifically in mouse and human testis and might play an important role in spermatogenesis.
      Title: Expression profile of a novel germ cell-specific gene, TSCPA, in mice and human.
    Submit: New GeneRIF Correction

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    testis-specific expressed protein 55
    Names
    testis-specific conserved, cAMP dependent type PK anchoring protein
    testis-specific conserved, cAMP-dependent type II PK-anchoring protein
    uncharacterized protein C3orf30 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001418951.1 → NP_001405880.1  testis-specific expressed protein 55 isoform 2

      Status: VALIDATED

      Source sequence(s)
      CT009576

    2. NM_029042.2 → NP_083318.1  testis-specific expressed protein 55 isoform 1

      Status: VALIDATED

      Source sequence(s)
      CT009576
      Consensus CDS
      CCDS49850.1
      UniProtKB/Swiss-Prot
      A4QMY3, A6X8Z9, Q8C5T0
      Related
      ENSMUSP00000113120.2, ENSMUST00000122078.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      38632566..38649134 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006522676.2 → XP_006522739.1  testis-specific expressed protein 55 isoform X2

      Conserved Domains (1) summary
      pfam17819
      Location:230 → 346
      DUF5582; Family of unknown function (DUF5582)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A6X8Z9.1 GenPept UniProtKB/Swiss-Prot:A6X8Z9

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