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    CG7102 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 34079, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG7102provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0031961
    Locus tag
    Dmel_CG7102
    See related
    AllianceGenome:FB:FBgn0031961
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG17973; Dmel\CG7102
    Summary
    Predicted to be involved in spliceosomal snRNP assembly. Predicted to be part of catalytic step 2 spliceosome. Orthologous to human BTBD19 (BTB domain containing 19). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG7102 in Genome Data Viewer
    Location:
    28D2-28D2; 2-29 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (7883282..7887513, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (7883282..7887513, complement)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene transfer RNA:Glycine-GCC 1-3 Neighboring gene spatzle 3 Neighboring gene uncharacterized protein Neighboring gene Small ribonucleoprotein particle protein SmE Neighboring gene Serpin 28Da Neighboring gene Serpin 28Db

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Bmmp influences wing morphology by regulating anterior-posterior and proximal-distal axes development. Zou YL, et al. Insect Sci, 2022 Dec. PMID 34986276
    2. Experimental selection for Drosophila survival in extremely low O(2) environment. Zhou D, et al. PLoS One, 2007 May 30. PMID 17534440, Free PMC Article
    3. The Neurexin/N-Ethylmaleimide-sensitive Factor (NSF) Interaction Regulates Short Term Synaptic Depression. Li T, et al. J Biol Chem, 2015 Jul 17. PMID 25953899, Free PMC Article
    4. Temperature, rainfall and wind variables underlie environmental adaptation in natural populations of Drosophila melanogaster. Bogaerts-Márquez M, et al. Mol Ecol, 2021 Feb. PMID 33350518, Free PMC Article
    5. Expression-Based Cell Lineage Analysis in Drosophila Through a Course-Based Research Experience for Early Undergraduates. Olson JM, et al. G3 (Bethesda), 2019 Nov 5. PMID 31690598, Free PMC Article

    See all (31) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in spliceosomal snRNP assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG7102-PA
    CG7102-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      7883282..7887513 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001298800.1 → NP_001285729.1  uncharacterized protein Dmel_CG7102, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001285729.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q960Q2, Q9VLV6
      Conserved Domains (4) summary
      smart00225
      Location:21 → 131
      BTB; Broad-Complex, Tramtrack and Bric a brac
      smart00875
      Location:143 → 255
      BACK; BTB And C-terminal Kelch
      smart00584
      Location:303 → 477
      TLDc; domain in TBC and LysM domain containing proteins
      pfam00651
      Location:10 → 128
      BTB; BTB/POZ domain

    2. NM_175980.2 → NP_787994.1  uncharacterized protein Dmel_CG7102, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_787994.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q960Q2, Q9VLV6
      Related
      FBpp0079181
      Conserved Domains (4) summary
      smart00225
      Location:21 → 131
      BTB; Broad-Complex, Tramtrack and Bric a brac
      smart00875
      Location:143 → 255
      BACK; BTB And C-terminal Kelch
      smart00584
      Location:303 → 477
      TLDc; domain in TBC and LysM domain containing proteins
      pfam00651
      Location:10 → 128
      BTB; BTB/POZ domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8MSF4 Q8MSF4
    Q9VLV6 Q9VLV6

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