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    Y48G1C.6 HTH CENPB-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 171597, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y48G1C.6
    Official Full Name
    HTH CENPB-type domain-containing protein
    Primary source
    WormBase:WBGene00021679
    Locus tag
    CELE_Y48G1C.6
    See related
    AllianceGenome:WB:WBGene00021679
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Orthologous to human POGK (pogo transposable element derived with KRAB domain). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y48G1C.6 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    3
    Sequence:
    Chromosome: I; NC_003279.8 (83992..86293, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Tyrosine-protein phosphatase domain-containing protein Neighboring gene Serine-threonine/tyrosine-protein kinase catalytic domain-containing protein;Tyrosine-protein kinase csk-1 Neighboring gene Myotubularin phosphatase domain-containing protein Neighboring gene Sm domain-containing protein Neighboring gene Chitin-binding type-2 domain-containing protein Neighboring gene Protein pid-2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    HTH CENPB-type domain-containing protein
    NP_490670.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      83992..86293 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_058269.4 → NP_490670.1  HTH CENPB-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_490670.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9N3P2
      Conserved Domains (2) summary
      smart00674
      Location:80 → 142
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      pfam13518
      Location:21 → 79
      HTH_28; Helix-turn-helix domain
    Nucleotide Protein
    Heading Accession and Version

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