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    rpain RPA interacting protein [ Fundulus heteroclitus (mummichog) ]

    Gene ID: 105940387, updated on 20-Aug-2024

    Summary

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    Gene symbol
    rpain
    Gene description
    RPA interacting protein
    See related
    EnsemblRapid:ENSFHEG00000016471
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Fundulus heteroclitus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
    Orthologs
    human zebrafish all
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    Genomic context

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    See rpain in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 16 NC_046376.1 (33524536..33528736)
    101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012224511.1 (288099..292194, complement)

    Chromosome 16 - NC_046376.1Genomic Context describing neighboring genes Neighboring gene N-ethylmaleimide-sensitive factor a Neighboring gene cyclin-dependent kinase 5 activator 1 Neighboring gene 26S proteasome non-ATPase regulatory subunit 11A Neighboring gene distal-less-like protein DLX-3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in PML body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RPA-interacting protein
    Names
    RPA-interacting protein A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MU-UCD_Fhet_4.1 Primary Assembly

    Genomic

    1. NC_046376.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

      Range
      33524536..33528736
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021308734.2 → XP_021164409.2  RPA-interacting protein isoform X1

      UniProtKB/TrEMBL
      A0A3Q2QST7
      Conserved Domains (3) summary
      pfam14766
      Location:6 → 43
      RPA_interact_N; Replication protein A interacting N-terminal
      pfam14767
      Location:55 → 145
      RPA_interact_M; Replication protein A interacting middle
      pfam14768
      Location:155 → 235
      RPA_interact_C; Replication protein A interacting C-terminal

    2. XM_012882904.3 → XP_012738358.2  RPA-interacting protein isoform X2

      UniProtKB/TrEMBL
      A0A3Q2QST7
      Related
      ENSFHEP00000030901.2, ENSFHET00000022822.2
      Conserved Domains (3) summary
      pfam14766
      Location:6 → 43
      RPA_interact_N; Replication protein A interacting N-terminal
      pfam14767
      Location:55 → 131
      RPA_interact_M; Replication protein A interacting middle
      pfam14768
      Location:141 → 221
      RPA_interact_C; Replication protein A interacting C-terminal
    Nucleotide Protein
    Heading Accession and Version

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