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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029453.2 RefSeqGene
- Range
-
45962..120957
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001037328.3 → NP_001032405.1 double-stranded RNA-binding protein Staufen homolog 1 isoform c
See identical proteins and their annotated locations for NP_001032405.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (T5) differs in the 5' UTR and uses an alternate in-frame splice site in the 5' coding region compared to variant T2. The encoded isoform (c) is longer than isoform a. Both variants T5 and T6 encode the same isoform (c).
- Source sequence(s)
-
AF061938, AK091405, BC010169, BC095397, BE439382
- Consensus CDS
-
CCDS33481.1
- UniProtKB/TrEMBL
-
Q5JW30
- Conserved Domains (3) summary
-
- smart00358
Location:105 → 175
- DSRM; Double-stranded RNA binding motif
- cd00048
Location:211 → 277
- DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
- pfam16482
Location:373 → 482
- Staufen_C; Staufen C-terminal domain
-
NM_001319134.2 → NP_001306063.1 double-stranded RNA-binding protein Staufen homolog 1 isoform c
Status: REVIEWED
- Description
- Transcript Variant: This variant (T6) uses an alternate in-frame splice site in the 5' coding region compared to variant T2. The encoded isoform (c) is longer than isoform a. Both variants T5 and T6 encode the same isoform (c).
- Source sequence(s)
-
AK091405, AY546099, BE439382, BQ649508, DB100321
- Consensus CDS
-
CCDS33481.1
- UniProtKB/TrEMBL
-
Q5JW30
- Related
- ENSP00000360893.3, ENST00000371828.7
- Conserved Domains (3) summary
-
- smart00358
Location:105 → 175
- DSRM; Double-stranded RNA binding motif
- cd00048
Location:211 → 277
- DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
- pfam16482
Location:373 → 482
- Staufen_C; Staufen C-terminal domain
-
NM_001319135.2 → NP_001306064.1 double-stranded RNA-binding protein Staufen homolog 1 isoform b
Status: REVIEWED
- Description
- Transcript Variant: This variant (T7) differs in the 5' UTR and the 5' coding region, and uses an upstream translation start site compared to variant T2. The encoded isoform (b) has a longer and distinct N-terminus compared to isoform a. Both variants T3 and T7 encode the same isoform (b).
- Source sequence(s)
-
AB209561, AK091405, BE439382, BQ649508, DB086071
- Consensus CDS
-
CCDS13414.1
- UniProtKB/Swiss-Prot
- A8K9Z4, E1P5Y1, E1P608, O95793, Q5JW29, Q6GTM4, Q9H5B4, Q9H5B5, Q9Y3Q2
- UniProtKB/TrEMBL
-
A8K622
- Conserved Domains (3) summary
-
- smart00358
Location:186 → 250
- DSRM; Double-stranded RNA binding motif
- cd00048
Location:286 → 352
- DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
- pfam16482
Location:448 → 557
- Staufen_C; Staufen C-terminal domain
-
NM_001322927.2 → NP_001309856.1 double-stranded RNA-binding protein Staufen homolog 1 isoform c
Status: REVIEWED
- Source sequence(s)
-
AL133174, BE439382, DA455473, DA858410
- Consensus CDS
-
CCDS33481.1
- UniProtKB/TrEMBL
-
Q5JW30
- Related
- ENSP00000360867.1, ENST00000371802.5
- Conserved Domains (3) summary
-
- smart00358
Location:105 → 175
- DSRM; Double-stranded RNA binding motif
- cd00048
Location:211 → 277
- DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
- pfam16482
Location:373 → 482
- Staufen_C; Staufen C-terminal domain
-
NM_001322928.2 → NP_001309857.1 double-stranded RNA-binding protein Staufen homolog 1 isoform d
Status: REVIEWED
- Source sequence(s)
-
AL133174, BE439382, DA455473, DA858410
- UniProtKB/TrEMBL
-
Q5JW30
- Conserved Domains (4) summary
-
- pfam16482
Location:413 → 522
- Staufen_C; Staufen C-terminal domain
- cd19881
Location:41 → 105
- DSRM_STAU1_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 1 (Staufen 1) and similar proteins
- cd19885
Location:241 → 326
- DSRM_STAU1_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 1 (Staufen 1) and similar proteins
- cl00054
Location:142 → 214
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
NM_001322929.2 → NP_001309858.1 double-stranded RNA-binding protein Staufen homolog 1 isoform b
Status: REVIEWED
- Source sequence(s)
-
AL133174, BE439382
- Consensus CDS
-
CCDS13414.1
- UniProtKB/Swiss-Prot
- A8K9Z4, E1P5Y1, E1P608, O95793, Q5JW29, Q6GTM4, Q9H5B4, Q9H5B5, Q9Y3Q2
- UniProtKB/TrEMBL
-
A8K622
- Conserved Domains (3) summary
-
- smart00358
Location:186 → 250
- DSRM; Double-stranded RNA binding motif
- cd00048
Location:286 → 352
- DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
- pfam16482
Location:448 → 557
- Staufen_C; Staufen C-terminal domain
-
NM_001322930.2 → NP_001309859.1 double-stranded RNA-binding protein Staufen homolog 1 isoform b
Status: REVIEWED
- Source sequence(s)
-
AL133174, BE439382, DA455473
- Consensus CDS
-
CCDS13414.1
- UniProtKB/Swiss-Prot
- A8K9Z4, E1P5Y1, E1P608, O95793, Q5JW29, Q6GTM4, Q9H5B4, Q9H5B5, Q9Y3Q2
- UniProtKB/TrEMBL
-
A8K622
- Conserved Domains (3) summary
-
- smart00358
Location:186 → 250
- DSRM; Double-stranded RNA binding motif
- cd00048
Location:286 → 352
- DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
- pfam16482
Location:448 → 557
- Staufen_C; Staufen C-terminal domain
-
NM_001322931.2 → NP_001309860.1 double-stranded RNA-binding protein Staufen homolog 1 isoform e
Status: REVIEWED
- Source sequence(s)
-
AL133174, BE439382, DA455473, DA858410
- UniProtKB/TrEMBL
-
Q5JW30
-
NM_001322932.2 → NP_001309861.1 double-stranded RNA-binding protein Staufen homolog 1 isoform f
Status: REVIEWED
- Source sequence(s)
-
AL133174, BE439382
- UniProtKB/TrEMBL
-
A8K622
- Conserved Domains (3) summary
-
- smart00358
Location:186 → 256
- DSRM; Double-stranded RNA binding motif
- cd00048
Location:292 → 358
- DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
- pfam16482
Location:454 → 563
- Staufen_C; Staufen C-terminal domain
-
NM_001322933.2 → NP_001309862.1 double-stranded RNA-binding protein Staufen homolog 1 isoform f
Status: REVIEWED
- Source sequence(s)
-
AL133174, BE439382
- UniProtKB/TrEMBL
-
A8K622
- Conserved Domains (3) summary
-
- smart00358
Location:186 → 256
- DSRM; Double-stranded RNA binding motif
- cd00048
Location:292 → 358
- DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
- pfam16482
Location:454 → 563
- Staufen_C; Staufen C-terminal domain
-
NM_004602.4 → NP_004593.2 double-stranded RNA-binding protein Staufen homolog 1 isoform a
See identical proteins and their annotated locations for NP_004593.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (T4) has an additional exon in the 5' UTR compared to T2, the most abundantly expressed transcript variant. T4 encodes the same isoform (a) of 496 amino acids as T2.
- Source sequence(s)
-
AF061941, AK091405, BC001893, BC050432, BC095397, BE439382
- Consensus CDS
-
CCDS13415.1
- UniProtKB/TrEMBL
-
Q5JW30
- Related
- ENSP00000345425.6, ENST00000340954.11
- Conserved Domains (3) summary
-
- smart00358
Location:105 → 169
- DSRM; Double-stranded RNA binding motif
- cd00048
Location:205 → 271
- DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
- pfam16482
Location:367 → 476
- Staufen_C; Staufen C-terminal domain
-
NM_017452.4 → NP_059346.2 double-stranded RNA-binding protein Staufen homolog 1 isoform a
See identical proteins and their annotated locations for NP_059346.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (T2) is most abundantly expressed, and encodes the protein isoform (a) of 496 amino acids.
- Source sequence(s)
-
AK091405, BC050432, BC095397, BE439382
- Consensus CDS
-
CCDS13415.1
- UniProtKB/TrEMBL
-
Q5JW30
- Related
- ENSP00000353604.4, ENST00000360426.8
- Conserved Domains (3) summary
-
- smart00358
Location:105 → 169
- DSRM; Double-stranded RNA binding motif
- cd00048
Location:205 → 271
- DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
- pfam16482
Location:367 → 476
- Staufen_C; Staufen C-terminal domain
-
NM_017453.4 → NP_059347.2 double-stranded RNA-binding protein Staufen homolog 1 isoform b
See identical proteins and their annotated locations for NP_059347.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (T3) differs in the 5' UTR and the 5' coding region, and uses an upstream translation start site compared to variant T2. The encoded isoform (b) has a longer and distinct N-terminus compared to isoform a. Both variants T3 and T7 encode the same isoform (b).
- Source sequence(s)
-
AL133174
- Consensus CDS
-
CCDS13414.1
- UniProtKB/Swiss-Prot
- A8K9Z4, E1P5Y1, E1P608, O95793, Q5JW29, Q6GTM4, Q9H5B4, Q9H5B5, Q9Y3Q2
- UniProtKB/TrEMBL
-
A8K622
- Related
- ENSP00000360922.2, ENST00000371856.7
- Conserved Domains (3) summary
-
- smart00358
Location:186 → 250
- DSRM; Double-stranded RNA binding motif
- cd00048
Location:286 → 352
- DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
- pfam16482
Location:448 → 557
- Staufen_C; Staufen C-terminal domain
-
NM_017454.4 → NP_059348.2 double-stranded RNA-binding protein Staufen homolog 1 isoform a
See identical proteins and their annotated locations for NP_059348.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (T1) lacks an exon in the 5' UTR compared to T2, the most abundantly expressed transcript variant. T1 encodes the same isoform (a) of 496 amino acids as T2.
- Source sequence(s)
-
AK091405, BC050432, BC095397, BE439382
- Consensus CDS
-
CCDS13415.1
- UniProtKB/TrEMBL
-
Q5JW30
- Related
- ENSP00000323443.7, ENST00000347458.9
- Conserved Domains (3) summary
-
- smart00358
Location:105 → 169
- DSRM; Double-stranded RNA binding motif
- cd00048
Location:205 → 271
- DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
- pfam16482
Location:367 → 476
- Staufen_C; Staufen C-terminal domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000020.11 Reference GRCh38.p14 Primary Assembly
- Range
-
49113339..49219295 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_005260527.1 → XP_005260584.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X5
See identical proteins and their annotated locations for XP_005260584.1
- UniProtKB/TrEMBL
-
Q5JW30
- Conserved Domains (3) summary
-
- smart00358
Location:105 → 175
- DSRM; Double-stranded RNA binding motif
- cd00048
Location:211 → 277
- DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
- pfam16482
Location:373 → 482
- Staufen_C; Staufen C-terminal domain
-
XM_017028028.2 → XP_016883517.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X4
- UniProtKB/TrEMBL
-
Q5JW30
-
XM_047440423.1 → XP_047296379.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X3
- UniProtKB/TrEMBL
-
Q5JW30
-
XM_006723865.2 → XP_006723928.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X1
See identical proteins and their annotated locations for XP_006723928.1
- UniProtKB/TrEMBL
-
A8K622
- Conserved Domains (3) summary
-
- smart00358
Location:186 → 256
- DSRM; Double-stranded RNA binding motif
- cd00048
Location:292 → 358
- DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
- pfam16482
Location:454 → 563
- Staufen_C; Staufen C-terminal domain
-
XM_047440420.1 → XP_047296376.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X2
- UniProtKB/Swiss-Prot
- A8K9Z4, E1P5Y1, E1P608, O95793, Q5JW29, Q6GTM4, Q9H5B4, Q9H5B5, Q9Y3Q2
- UniProtKB/TrEMBL
-
A8K622
-
XM_047440416.1 → XP_047296372.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X1
- UniProtKB/TrEMBL
-
A8K622
-
XM_047440419.1 → XP_047296375.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X2
- UniProtKB/Swiss-Prot
- A8K9Z4, E1P5Y1, E1P608, O95793, Q5JW29, Q6GTM4, Q9H5B4, Q9H5B5, Q9Y3Q2
- UniProtKB/TrEMBL
-
A8K622
-
XM_047440414.1 → XP_047296370.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X1
- UniProtKB/TrEMBL
-
A8K622
-
XM_047440418.1 → XP_047296374.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X2
- UniProtKB/Swiss-Prot
- A8K9Z4, E1P5Y1, E1P608, O95793, Q5JW29, Q6GTM4, Q9H5B4, Q9H5B5, Q9Y3Q2
- UniProtKB/TrEMBL
-
A8K622
-
XM_047440415.1 → XP_047296371.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X1
- UniProtKB/TrEMBL
-
A8K622
-
XM_047440422.1 → XP_047296378.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X2
- UniProtKB/Swiss-Prot
- A8K9Z4, E1P5Y1, E1P608, O95793, Q5JW29, Q6GTM4, Q9H5B4, Q9H5B5, Q9Y3Q2
- UniProtKB/TrEMBL
-
A8K622
-
XM_047440421.1 → XP_047296377.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X2
- UniProtKB/Swiss-Prot
- A8K9Z4, E1P5Y1, E1P608, O95793, Q5JW29, Q6GTM4, Q9H5B4, Q9H5B5, Q9Y3Q2
- UniProtKB/TrEMBL
-
A8K622
-
XM_047440417.1 → XP_047296373.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X1
- UniProtKB/TrEMBL
-
A8K622
-
XM_047440424.1 → XP_047296380.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X4
- UniProtKB/TrEMBL
-
Q5JW30
Alternate T2T-CHM13v2.0
Genomic
-
NC_060944.1 Alternate T2T-CHM13v2.0
- Range
-
50882825..50988811 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054323930.1 → XP_054179905.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X5
- UniProtKB/TrEMBL
-
Q5JW30
-
XM_054323928.1 → XP_054179903.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X4
- UniProtKB/TrEMBL
-
Q5JW30
-
XM_054323927.1 → XP_054179902.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X3
- UniProtKB/TrEMBL
-
Q5JW30
-
XM_054323919.1 → XP_054179894.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X1
- UniProtKB/TrEMBL
-
A8K622
-
XM_054323925.1 → XP_054179900.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X2
- UniProtKB/Swiss-Prot
- A8K9Z4, E1P5Y1, E1P608, O95793, Q5JW29, Q6GTM4, Q9H5B4, Q9H5B5, Q9Y3Q2
- UniProtKB/TrEMBL
-
A8K622
-
XM_054323924.1 → XP_054179899.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X2
- UniProtKB/Swiss-Prot
- A8K9Z4, E1P5Y1, E1P608, O95793, Q5JW29, Q6GTM4, Q9H5B4, Q9H5B5, Q9Y3Q2
- UniProtKB/TrEMBL
-
A8K622
-
XM_054323920.1 → XP_054179895.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X1
- UniProtKB/TrEMBL
-
A8K622
-
XM_054323921.1 → XP_054179896.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X1
- UniProtKB/TrEMBL
-
A8K622
-
XM_054323923.1 → XP_054179898.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X2
- UniProtKB/Swiss-Prot
- A8K9Z4, E1P5Y1, E1P608, O95793, Q5JW29, Q6GTM4, Q9H5B4, Q9H5B5, Q9Y3Q2
- UniProtKB/TrEMBL
-
A8K622
-
XM_054323926.1 → XP_054179901.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X2
- UniProtKB/Swiss-Prot
- A8K9Z4, E1P5Y1, E1P608, O95793, Q5JW29, Q6GTM4, Q9H5B4, Q9H5B5, Q9Y3Q2
- UniProtKB/TrEMBL
-
A8K622
-
XM_054323922.1 → XP_054179897.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X1
- UniProtKB/TrEMBL
-
A8K622
-
XM_054323929.1 → XP_054179904.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X4
- UniProtKB/TrEMBL
-
Q5JW30