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    C28H8.5 ShKT domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 182996, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C28H8.5
    Official Full Name
    ShKT domain-containing protein
    Primary source
    WormBase:WBGene00016196
    Locus tag
    CELE_C28H8.5
    See related
    AllianceGenome:WB:WBGene00016196
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Orthologous to human THAP4 (THAP domain containing 4). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C28H8.5 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    6
    Sequence:
    Chromosome: III; NC_003281.10 (5884307..5885852)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene COX assembly mitochondrial protein Neighboring gene SAC3/GANP/THP3 conserved domain-containing protein;SAC3_GANP domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene Uncharacterized protein Neighboring gene Uncharacterized protein Neighboring gene Paxillin homolog 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    ShKT domain-containing protein
    NP_001040848.1
    • Partially confirmed by transcript evidence
    NP_001040849.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      5884307..5885852
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001047383.3 → NP_001040848.1  ShKT domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001040848.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q09244
      Conserved Domains (2) summary
      smart00254
      Location:80 → 115
      ShKT; ShK toxin domain
      cd07828
      Location:132 → 300
      lipocalin_heme-bd-THAP4-like; heme-binding beta-barrel domain of human THAP4, Arabidopsis thaliana nitrobindin, and similar proteins

    2. NM_001047384.2 → NP_001040849.1  ShKT domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001040849.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q27GU9
      Conserved Domains (2) summary
      smart00254
      Location:32 → 67
      ShKT; ShK toxin domain
      cd07828
      Location:84 → 252
      lipocalin_heme-bd-THAP4-like; heme-binding beta-barrel domain of human THAP4, Arabidopsis thaliana nitrobindin, and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q09244.1

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