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    F58E6.13 DDE_Tnp_Tn3 domain-containing protein;EGF-like domain-containing protein;Secreted protein [ Caenorhabditis elegans ]

    Gene ID: 6418750, updated on 14-Nov-2024

    Summary

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    Official Symbol
    F58E6.13
    Official Full Name
    DDE_Tnp_Tn3 domain-containing protein;EGF-like domain-containing protein;Secreted protein
    Primary source
    WormBase:WBGene00077697
    Locus tag
    CELE_F58E6.13
    See related
    AllianceGenome:WB:WBGene00077697
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See F58E6.13 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    9
    Sequence:
    Chromosome: V; NC_003283.11 (9745234..9749219)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Activin_recp domain-containing protein Neighboring gene CUB domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cell surface IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    DDE_Tnp_Tn3 domain-containing protein;EGF-like domain-containing protein;Secreted protein
    NP_001256134.1
    • Confirmed by transcript evidence
    NP_001256135.1
    • Confirmed by transcript evidence
    NP_001256136.1
    • Confirmed by transcript evidence
    NP_001294677.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      9745234..9749219
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001269205.4 → NP_001256134.1  EGF-like domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256134.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2FLH1
      Conserved Domains (2) summary
      pfam07699
      Location:184 → 231
      GCC2_GCC3; GCC2 and GCC3
      cl21504
      Location:399 → 439
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

    2. NM_001269206.4 → NP_001256135.1  Secreted protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256135.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B2D6L7

    3. NM_001307748.3 → NP_001294677.1  EGF-like domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294677.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A061ACS5
      Conserved Domains (2) summary
      pfam07699
      Location:128 → 175
      GCC2_GCC3; GCC2 and GCC3
      cl21504
      Location:343 → 383
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

    4. NM_001269207.3 → NP_001256136.1  DDE_Tnp_Tn3 domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256136.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F5GUB1
    Nucleotide Protein
    Heading Accession and Version

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