U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    A830018L16Rik RIKEN cDNA A830018L16 gene [ Mus musculus (house mouse) ]

    Gene ID: 320492, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    A830018L16Rikprovided by MGI
    Official Full Name
    RIKEN cDNA A830018L16 geneprovided by MGI
    Primary source
    MGI:MGI:2444149
    See related
    Ensembl:ENSMUSG00000057715 AllianceGenome:MGI:2444149
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C8orf34 (chromosome 8 open reading frame 34). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in cortex adult (RPKM 1.9), frontal lobe adult (RPKM 1.7) and 8 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See A830018L16Rik in Genome Data Viewer
    Location:
    1 A2; 1 2.57 cM
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (11484121..12046126)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (11413615..11975902)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_00190 Neighboring gene STARR-seq mESC enhancer starr_00191 Neighboring gene predicted gene 28659 Neighboring gene STARR-seq mESC enhancer starr_00193 Neighboring gene STARR-seq mESC enhancer starr_00195 Neighboring gene phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 Neighboring gene predicted gene, 24173 Neighboring gene STARR-seq mESC enhancer starr_00196 Neighboring gene STARR-seq mESC enhancer starr_00198 Neighboring gene STARR-seq mESC enhancer starr_00199 Neighboring gene STARR-seq mESC enhancer starr_00200 Neighboring gene STARR-seq mESC enhancer starr_00202 Neighboring gene STARR-seq mESC enhancer starr_00204 Neighboring gene STARR-seq mESC enhancer starr_00208 Neighboring gene STARR-seq mESC enhancer starr_00209 Neighboring gene STARR-seq mESC enhancer starr_00210 Neighboring gene STARR-seq mESC enhancer starr_00211 Neighboring gene STARR-seq mESC enhancer starr_00212 Neighboring gene STARR-seq mESC enhancer starr_00213 Neighboring gene STARR-seq mESC enhancer starr_00214 Neighboring gene predicted gene, 30898 Neighboring gene predicted gene, 30974

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
    2. BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain. Pourhaghighi R, et al. Cell Syst, 2020 Apr 22. PMID 32325033, Free PMC Article
    3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein C8orf34 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001160369.2 → NP_001153841.1  uncharacterized protein C8orf34 homolog isoform 1

      See identical proteins and their annotated locations for NP_001153841.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AC140778, AK034391, AK081622, AW456259
      Consensus CDS
      CCDS48219.1
      UniProtKB/TrEMBL
      B2RQF6, B7ZN56
      Related
      ENSMUSP00000117421.2, ENSMUST00000137824.8

    2. NM_001160370.2 → NP_001153842.1  uncharacterized protein C8orf34 homolog isoform 3

      See identical proteins and their annotated locations for NP_001153842.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (3) has a shorter and distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AK081622, AK136763, CJ257882
      Consensus CDS
      CCDS48220.1
      UniProtKB/Swiss-Prot
      Q8BZJ8
      Related
      ENSMUSP00000119143.2, ENSMUST00000135014.8

    3. NM_001160371.2 → NP_001153843.1  uncharacterized protein C8orf34 homolog isoform 4

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (4) has a shorter and distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AK081222, AK081622, AK136763, CJ257882
      Consensus CDS
      CCDS48218.1
      UniProtKB/Swiss-Prot
      Q8BZJ8
      Related
      ENSMUSP00000132334.3, ENSMUST00000171690.9

    4. NM_001310451.1 → NP_001297380.1  uncharacterized protein C8orf34 homolog isoform 5

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (5) has the same N- and C-termini but is shorter compared to isoform 1.
      Source sequence(s)
      AK034391, AK081622, AW456259
      UniProtKB/TrEMBL
      B7ZN56

    5. NM_001374633.1 → NP_001361562.1  uncharacterized protein C8orf34 homolog isoform 6

      Status: VALIDATED

      Source sequence(s)
      AC102654, AC103635, AC110029, AC140778
      Consensus CDS
      CCDS87813.1
      UniProtKB/TrEMBL
      B7ZN56, B7ZN57
      Related
      ENSMUSP00000137287.3, ENSMUST00000179089.8
      Conserved Domains (1) summary
      pfam17824
      Location:6 → 396
      DUF5586; Family of unknown function (DUF5586)

    6. NM_001374634.1 → NP_001361563.1  uncharacterized protein C8orf34 homolog isoform 7

      Status: VALIDATED

      Source sequence(s)
      AC102654, AC103635, AC110029, AC140778
      UniProtKB/TrEMBL
      B7ZN56
      Conserved Domains (1) summary
      pfam17824
      Location:1 → 323
      DUF5586; Family of unknown function (DUF5586)

    7. NM_001400289.1 → NP_001387218.1  uncharacterized protein C8orf34 homolog isoform 8

      Status: VALIDATED

      Source sequence(s)
      AC102654, AC103635, AC140778

    8. NM_001400291.1 → NP_001387220.1  uncharacterized protein C8orf34 homolog isoform 9

      Status: VALIDATED

      Source sequence(s)
      AC102654

    9. NM_177173.6 → NP_796147.2  uncharacterized protein C8orf34 homolog isoform 2

      See identical proteins and their annotated locations for NP_796147.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice junction at the 3' end of an exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is 3 aa shorter compared to isoform 1.
      Source sequence(s)
      AK034391, AK081622, AW456259
      Consensus CDS
      CCDS35513.1
      UniProtKB/Swiss-Prot
      Q3UVZ9, Q8BJN6, Q8BUZ5, Q8BZJ8
      UniProtKB/TrEMBL
      B7ZN56
      Related
      ENSMUSP00000043857.8, ENSMUST00000048613.14

    RNA

    1. NR_174472.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC102654, AC103635, AC110029, AC140778
      Related
      ENSMUST00000141512.8

    2. NR_174473.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC102654

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      11484121..12046126
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030254977.2 → XP_030110837.1  uncharacterized protein C8orf34 homolog isoform X6

      Conserved Domains (1) summary
      pfam17824
      Location:44 → 228
      DUF5586; Family of unknown function (DUF5586)

    2. XM_006495540.4 → XP_006495603.1  uncharacterized protein C8orf34 homolog isoform X1

      UniProtKB/TrEMBL
      B7ZN56
      Conserved Domains (1) summary
      pfam17824
      Location:6 → 369
      DUF5586; Family of unknown function (DUF5586)

    3. XM_030254976.2 → XP_030110836.1  uncharacterized protein C8orf34 homolog isoform X3

      UniProtKB/TrEMBL
      B7ZN56
      Conserved Domains (1) summary
      pfam17824
      Location:6 → 353
      DUF5586; Family of unknown function (DUF5586)

    4. XM_036165706.1 → XP_036021599.1  uncharacterized protein C8orf34 homolog isoform X2

      UniProtKB/TrEMBL
      B7ZN56
      Conserved Domains (1) summary
      pfam17824
      Location:6 → 366
      DUF5586; Family of unknown function (DUF5586)

    5. XM_036165718.1 → XP_036021611.1  uncharacterized protein C8orf34 homolog isoform X6

      Conserved Domains (1) summary
      pfam17824
      Location:44 → 228
      DUF5586; Family of unknown function (DUF5586)

    6. XM_006495544.3 → XP_006495607.1  uncharacterized protein C8orf34 homolog isoform X6

      Conserved Domains (1) summary
      pfam17824
      Location:44 → 228
      DUF5586; Family of unknown function (DUF5586)

    7. XM_036165716.1 → XP_036021609.1  uncharacterized protein C8orf34 homolog isoform X4

      Conserved Domains (1) summary
      pfam17824
      Location:1 → 277
      DUF5586; Family of unknown function (DUF5586)

    8. XM_036165717.1 → XP_036021610.1  uncharacterized protein C8orf34 homolog isoform X5

      Conserved Domains (1) summary
      pfam17824
      Location:1 → 309
      DUF5586; Family of unknown function (DUF5586)

    RNA

    1. XR_004942886.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BZJ8.1 GenPept UniProtKB/Swiss-Prot:Q8BZJ8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools