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    ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 [ Gallus gallus (chicken) ]

    Gene ID: 417794, updated on 17-Aug-2024

    Summary

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    Symbol
    ADAMTS20provided by CGNC
    Full Name
    ADAM metallopeptidase with thrombospondin type 1 motif 20provided by CGNC
    Primary source
    CGNC:7287
    See related
    Ensembl:ENSGALG00010001858
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See ADAMTS20 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    39
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (30063860..30148435, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (30401700..30486357, complement)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene periphilin 1 Neighboring gene microRNA 7447 Neighboring gene uncharacterized LOC121106849 Neighboring gene prickle planar cell polarity protein 1 Neighboring gene uncharacterized LOC124417300 Neighboring gene basic proline-rich protein-like Neighboring gene pseudouridylate synthase 7 like Neighboring gene interleukin 1 receptor associated kinase 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in extracellular matrix organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    A disintegrin and metalloproteinase with thrombospondin motifs 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      30063860..30148435 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015282468.4 → XP_015137954.2  A disintegrin and metalloproteinase with thrombospondin motifs 20 isoform X4

      UniProtKB/TrEMBL
      A0A8V0XD62
      Conserved Domains (3) summary
      smart00209
      Location:554 → 606
      TSP1; Thrombospondin type 1 repeats
      cd04273
      Location:253 → 459
      ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
      pfam05986
      Location:716 → 834
      ADAM_spacer1; ADAM-TS Spacer 1

    2. XM_015282450.4 → XP_015137936.2  A disintegrin and metalloproteinase with thrombospondin motifs 20 isoform X2

      UniProtKB/TrEMBL
      A0A8V0XD62
      Conserved Domains (3) summary
      smart00209
      Location:554 → 606
      TSP1; Thrombospondin type 1 repeats
      cd04273
      Location:253 → 459
      ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
      pfam05986
      Location:719 → 826
      ADAM_spacer1; ADAM-TS Spacer 1

    3. XM_015282451.4 → XP_015137937.1  A disintegrin and metalloproteinase with thrombospondin motifs 20 isoform X3

      UniProtKB/TrEMBL
      A0A8V0XD62
      Conserved Domains (6) summary
      smart00209
      Location:554 → 606
      TSP1; Thrombospondin type 1 repeats
      cd04273
      Location:253 → 459
      ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
      pfam01421
      Location:253 → 462
      Reprolysin; Reprolysin (M12B) family zinc metalloprotease
      pfam01562
      Location:64 → 176
      Pep_M12B_propep; Reprolysin family propeptide
      pfam05986
      Location:716 → 834
      ADAM_spacer1; ADAM-TS Spacer 1
      pfam08685
      Location:1642 → 1838
      GON; GON domain

    4. XM_015282444.4 → XP_015137930.2  A disintegrin and metalloproteinase with thrombospondin motifs 20 isoform X1

      UniProtKB/TrEMBL
      A0A8V0X7B5, A0A8V0XD62
      Related
      ENSGALP00010002521.1, ENSGALT00010004224.1
      Conserved Domains (3) summary
      smart00209
      Location:554 → 606
      TSP1; Thrombospondin type 1 repeats
      cd04273
      Location:253 → 459
      ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
      pfam05986
      Location:716 → 834
      ADAM_spacer1; ADAM-TS Spacer 1

    5. XM_025154135.3 → XP_025009903.2  A disintegrin and metalloproteinase with thrombospondin motifs 20 isoform X5

      UniProtKB/TrEMBL
      A0A8V0XAF3, A0A8V0XD62
      Related
      ENSGALP00010002519.1, ENSGALT00010004222.1
      Conserved Domains (3) summary
      smart00209
      Location:554 → 606
      TSP1; Thrombospondin type 1 repeats
      cd04273
      Location:253 → 459
      ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
      pfam05986
      Location:716 → 834
      ADAM_spacer1; ADAM-TS Spacer 1

    RNA

    1. XR_003077126.3 RNA Sequence

    2. XR_003077121.3 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      30401700..30486357 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040658954.2 → XP_040514888.1  A disintegrin and metalloproteinase with thrombospondin motifs 20 isoform X4

      UniProtKB/TrEMBL
      A0A8V0XD62
      Conserved Domains (3) summary
      smart00209
      Location:554 → 606
      TSP1; Thrombospondin type 1 repeats
      cd04273
      Location:253 → 459
      ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
      pfam05986
      Location:716 → 834
      ADAM_spacer1; ADAM-TS Spacer 1

    2. XM_040658952.2 → XP_040514886.1  A disintegrin and metalloproteinase with thrombospondin motifs 20 isoform X2

      UniProtKB/TrEMBL
      A0A8V0XD62
      Conserved Domains (3) summary
      smart00209
      Location:554 → 606
      TSP1; Thrombospondin type 1 repeats
      cd04273
      Location:253 → 459
      ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
      pfam05986
      Location:719 → 826
      ADAM_spacer1; ADAM-TS Spacer 1

    3. XM_040658953.2 → XP_040514887.1  A disintegrin and metalloproteinase with thrombospondin motifs 20 isoform X3

      UniProtKB/TrEMBL
      A0A8V0XD62
      Conserved Domains (3) summary
      smart00209
      Location:554 → 606
      TSP1; Thrombospondin type 1 repeats
      cd04273
      Location:253 → 459
      ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
      pfam05986
      Location:716 → 834
      ADAM_spacer1; ADAM-TS Spacer 1

    4. XM_040658951.2 → XP_040514885.1  A disintegrin and metalloproteinase with thrombospondin motifs 20 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XD62
      Conserved Domains (3) summary
      smart00209
      Location:554 → 606
      TSP1; Thrombospondin type 1 repeats
      cd04273
      Location:253 → 459
      ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
      pfam05986
      Location:716 → 834
      ADAM_spacer1; ADAM-TS Spacer 1

    5. XM_040658955.2 → XP_040514889.1  A disintegrin and metalloproteinase with thrombospondin motifs 20 isoform X5

      UniProtKB/TrEMBL
      A0A8V0XD62
      Conserved Domains (3) summary
      smart00209
      Location:554 → 606
      TSP1; Thrombospondin type 1 repeats
      cd04273
      Location:253 → 459
      ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
      pfam05986
      Location:716 → 834
      ADAM_spacer1; ADAM-TS Spacer 1

    RNA

    1. XR_005844257.2 RNA Sequence

    2. XR_005844256.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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