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    Ecym_3244 Hypothetical protein [ Eremothecium cymbalariae DBVPG#7215 ]

    Gene ID: 11472170, updated on 6-Dec-2024

    Summary

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    Gene symbol
    Ecym_3244
    Gene description
    Hypothetical protein
    Locus tag
    Ecym_3244
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Eremothecium cymbalariae DBVPG#7215 (strain: DBVPG#7215)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium
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    Genomic context

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    See Ecym_3244 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_016451.1 (463536..466646, complement)

    Chromosome 3 - NC_016451.1Genomic Context describing neighboring genes Neighboring gene Neighboring gene rRNA-processing protein UTP21 Neighboring gene Hypothetical protein Neighboring gene Hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_016451.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome evolution in the eremothecium clade of the Saccharomyces complex revealed by comparative genomics. Wendland J, et al. G3 (Bethesda), 2011 Dec. PMID 22384365, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in autophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endosomal vesicle fusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in fungal-type vacuole membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Hypothetical protein
    XP_003645554.1
    • similar to Ashbya gossypii AER080W

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_016451.1 Reference assembly

      Range
      463536..466646 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003645506.1 → XP_003645554.1  Hypothetical protein Ecym_3244 [Eremothecium cymbalariae DBVPG#7215]

      See identical proteins and their annotated locations for XP_003645554.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      G8JRG8
      Conserved Domains (2) summary
      pfam10366
      Location:596 → 704
      Vps39_1; Vacuolar sorting protein 39 domain 1
      pfam10367
      Location:892 → 1004
      Vps39_2; Vacuolar sorting protein 39 domain 2
    Nucleotide Protein
    Heading Accession and Version

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