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    Mrpl36 mitochondrial ribosomal protein L36 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 364656, updated on 9-Dec-2024

    Summary

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    Symbol
    Mrpl36provided by RGD
    Full Name
    mitochondrial ribosomal protein L36provided by RGD
    Primary source
    RGD:1306375
    See related
    EnsemblRapid:ENSRNOG00000023407 AllianceGenome:RGD:1306375
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in mitochondrion and nuclear body. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL36 (mitochondrial ribosomal protein L36). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 205.6), Kidney (RPKM 196.6) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Mrpl36 in Genome Data Viewer
    Location:
    1p11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (31794025..31797446, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (29965481..29968896, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (31261370..31264715, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene lysophosphatidylcholine acyltransferase 1 Neighboring gene uncharacterized LOC120098986 Neighboring gene uncharacterized LOC120098989 Neighboring gene NADH:ubiquinone oxidoreductase subunit S6 Neighboring gene iroquois homeobox 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Structure of the large ribosomal subunit from human mitochondria. Brown A, et al. Science, 2014 Nov 7. PMID 25278503, Free PMC Article
    2. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of mitochondrial large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of mitochondrial large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
    		  
    part_of mitochondrial large ribosomal subunit ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nuclear body IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nuclear body ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    large ribosomal subunit protein bL36m
    Names
    39S ribosomal protein L36, mitochondrial
    39S ribosomal protein L36, mitochondrial-like
    L36mt
    MRP-L36

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108879.1 → NP_001102349.1  large ribosomal subunit protein bL36m

      See identical proteins and their annotated locations for NP_001102349.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474002
      UniProtKB/Swiss-Prot
      B2RZ39
      Conserved Domains (1) summary
      pfam00444
      Location:60 → 97
      Ribosomal_L36; Ribosomal protein L36

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      31794025..31797446 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006227765.5 → XP_006227827.1  large ribosomal subunit protein bL36m isoform X1

      See identical proteins and their annotated locations for XP_006227827.1

      UniProtKB/Swiss-Prot
      B2RZ39
      Conserved Domains (1) summary
      pfam00444
      Location:60 → 97
      Ribosomal_L36; Ribosomal protein L36

    2. XM_006227762.4 → XP_006227824.1  large ribosomal subunit protein bL36m isoform X1

      See identical proteins and their annotated locations for XP_006227824.1

      UniProtKB/Swiss-Prot
      B2RZ39
      Related
      ENSRNOP00000105199.1, ENSRNOT00000149585.1
      Conserved Domains (1) summary
      pfam00444
      Location:60 → 97
      Ribosomal_L36; Ribosomal protein L36

    3. XM_006227763.4 → XP_006227825.1  large ribosomal subunit protein bL36m isoform X1

      See identical proteins and their annotated locations for XP_006227825.1

      UniProtKB/Swiss-Prot
      B2RZ39
      Related
      ENSRNOP00000032662.3, ENSRNOT00000029531.7
      Conserved Domains (1) summary
      pfam00444
      Location:60 → 97
      Ribosomal_L36; Ribosomal protein L36

    4. XM_006227764.5 → XP_006227826.1  large ribosomal subunit protein bL36m isoform X1

      See identical proteins and their annotated locations for XP_006227826.1

      UniProtKB/Swiss-Prot
      B2RZ39
      Conserved Domains (1) summary
      pfam00444
      Location:60 → 97
      Ribosomal_L36; Ribosomal protein L36

    5. XM_017589462.3 → XP_017444951.1  large ribosomal subunit protein bL36m isoform X1

      UniProtKB/Swiss-Prot
      B2RZ39
      Conserved Domains (1) summary
      pfam00444
      Location:60 → 97
      Ribosomal_L36; Ribosomal protein L36
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B2RZ39.1 GenPept UniProtKB/Swiss-Prot:B2RZ39

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