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    col-7 Cuticle collagen 7 [ Caenorhabditis elegans ]

    Gene ID: 172494, updated on 9-Dec-2024

    Summary

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    Official Symbol
    col-7
    Official Full Name
    Cuticle collagen 7
    Primary source
    WormBase:WBGene00000596
    Locus tag
    CELE_C15A11.5
    See related
    AllianceGenome:WB:WBGene00000596
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. Is expressed in seam cell. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See col-7 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    2
    Sequence:
    Chromosome: I; NC_003279.8 (7401132..7402761)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Suppressor of lurcher protein 1 Neighboring gene ncRNA Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene Nematode cuticle collagen N-terminal domain-containing protein Neighboring gene Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Caenorhabditis elegans heterochronic gene pathway controls stage-specific transcription of collagen genes. Liu Z, et al. Development, 1995 Aug. PMID 7671811
    2. Domain organization and intron positions in Caenorhabditis elegans collagen genes: the 54-bp module hypothesis revisited. Fields C. J Mol Evol, 1988 Dec-1989 Feb. PMID 3148742
    3. Sequence comparisons of developmentally regulated collagen genes of Caenorhabditis elegans. Cox GN, et al. Gene, 1989. PMID 2753356
    4. Sequence comparison of the Caenorhabditis elegans dpy-13 and col-34 genes, and their deduced collagen products. Bird DM. Gene, 1992 Oct 21. PMID 1398138
    5. Molecular biology of the cuticle collagen gene families of Caenorhabditis elegans and Haemonchus contortus. Cox GN. Acta Trop, 1990 Jul. PMID 1978527

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables structural constituent of cuticle IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Cuticle collagen 7
    NP_492090.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      7401132..7402761
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_059689.8 → NP_492090.1  Cuticle collagen 7 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_492090.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P18832, Q93210
      Conserved Domains (2) summary
      pfam01391
      Location:100 → 157
      Collagen; Collagen triple helix repeat (20 copies)
      smart01088
      Location:5 → 57
      Col_cuticle_N; Nematode cuticle collagen N-terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P18832.2

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