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    sobpa sine oculis binding protein homolog (Drosophila) a [ Oreochromis niloticus (Nile tilapia) ]

    Gene ID: 100709509, updated on 8-Mar-2024

    Summary

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    Gene symbol
    sobpa
    Gene description
    sine oculis binding protein homolog (Drosophila) a
    See related
    Ensembl:ENSONIG00000019530
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oreochromis niloticus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
    Also known as
    sobp
    Orthologs
    human zebrafish all
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    Genomic context

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    See sobpa in Genome Data Viewer
    Location:
    chromosome: LG19
    Exon count:
    8
    Annotation release Status Assembly LG Location
    104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG19 NC_031983.2 (24704513..24759736, complement)
    103 previous assembly ASM185804v2 (GCF_001858045.1) LG19 NC_031983.1 (6044322..6099632)

    Linkage Group LG19 - NC_031983.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109196002 Neighboring gene rho-associated, coiled-coil containing protein kinase 2a Neighboring gene prenyl (decaprenyl) diphosphate synthase, subunit 2 Neighboring gene BEN domain containing 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in animal organ development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sine oculis-binding protein homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference O_niloticus_UMD_NMBU Primary Assembly

    Genomic

    1. NC_031983.2 Reference O_niloticus_UMD_NMBU Primary Assembly

      Range
      24704513..24759736 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005477542.4 → XP_005477599.1  sine oculis-binding protein homolog isoform X1

      UniProtKB/TrEMBL
      A0A669BWI3
      Related
      ENSONIP00000040094.1, ENSONIT00000049068.1
      Conserved Domains (1) summary
      pfam15279
      Location:234 → 526
      SOBP; Sine oculis-binding protein

    2. XM_003445506.5 → XP_003445554.1  sine oculis-binding protein homolog isoform X2

      UniProtKB/TrEMBL
      I3KTY8
      Related
      ENSONIP00000024584.1, ENSONIT00000024605.2
      Conserved Domains (1) summary
      pfam15279
      Location:226 → 518
      SOBP; Sine oculis-binding protein

    3. XM_025900889.1 → XP_025756674.1  sine oculis-binding protein homolog isoform X3

      Conserved Domains (1) summary
      pfam15279
      Location:202 → 494
      SOBP; Sine oculis-binding protein

    4. XM_005477543.4 → XP_005477600.1  sine oculis-binding protein homolog isoform X4

      Conserved Domains (1) summary
      pfam15279
      Location:194 → 486
      SOBP; Sine oculis-binding protein
    Nucleotide Protein
    Heading Accession and Version

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