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    LOC18025274 retinoblastoma-related protein 1 [ Eutrema salsugineum ]

    Gene ID: 18025274, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC18025274
    Gene description
    retinoblastoma-related protein 1
    Locus tag
    EUTSA_v10019977mg
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Eutrema salsugineum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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    Genomic context

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    See LOC18025274 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256885.1 (5428683..5434457)

    NW_006256885.1Genomic Context describing neighboring genes Neighboring gene cilia- and flagella-associated protein 20 Neighboring gene bifunctional protein FolD 2 Neighboring gene uncharacterized LOC112088938 Neighboring gene probable protein arginine N-methyltransferase 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006256885 Unplaced Scaffold Reference Eutsalg1_0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of G1/S transition of mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retinoblastoma-related protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Eutsalg1_0

    Genomic

    1. NW_006256885.1 Reference Eutsalg1_0

      Range
      5428683..5434457
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006407285.2 → XP_006407348.1  retinoblastoma-related protein 1 isoform X2

      See identical proteins and their annotated locations for XP_006407348.1

      UniProtKB/TrEMBL
      V4NQD9
      Conserved Domains (3) summary
      pfam01857
      Location:732 → 859
      RB_B; Retinoblastoma-associated protein B domain
      pfam01858
      Location:409 → 610
      RB_A; Retinoblastoma-associated protein A domain
      pfam11934
      Location:91 → 218
      DUF3452; Domain of unknown function (DUF3452)

    2. XM_006407284.2 → XP_006407347.1  retinoblastoma-related protein 1 isoform X3

      See identical proteins and their annotated locations for XP_006407347.1

      UniProtKB/TrEMBL
      V4LE96
      Conserved Domains (3) summary
      pfam01857
      Location:732 → 859
      RB_B; Retinoblastoma-associated protein B domain
      pfam01858
      Location:409 → 610
      RB_A; Retinoblastoma-associated protein A domain
      pfam11934
      Location:91 → 218
      DUF3452; Domain of unknown function (DUF3452)

    3. XM_024159123.1 → XP_024014891.1  retinoblastoma-related protein 1 isoform X1

      Conserved Domains (3) summary
      pfam01857
      Location:740 → 867
      RB_B; Retinoblastoma-associated protein B domain
      pfam01858
      Location:417 → 618
      RB_A; Retinoblastoma-associated protein A domain
      pfam11934
      Location:99 → 226
      DUF3452; Domain of unknown function (DUF3452)
    Nucleotide Protein
    Heading Accession and Version

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