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    Zc3hc1 zinc finger C3HC-type containing 1 [ Fukomys damarensis (Damara mole-rat) ]

    Gene ID: 104868626, updated on 12-Mar-2024

    Summary

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    Gene symbol
    Zc3hc1
    Gene description
    zinc finger C3HC-type containing 1
    Locus tag
    H920_09286
    See related
    Ensembl:ENSFDAG00000019897
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Fukomys damarensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
    Orthologs
    human mouse all
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    Genomic context

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    See Zc3hc1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900916.1 (37168859..37189688)
    101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011045221.1 (3677440..3698293, complement)

    NW_022900916.1Genomic Context describing neighboring genes Neighboring gene kelch domain containing 10 Neighboring gene uncharacterized LOC104868625 Neighboring gene ubiquitin conjugating enzyme E2 H Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC117283420

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear-interacting partner of ALK
    Names
    Nuclear-interacting partner of ALK

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference DMR_v1.0_HiC Primary Assembly

    Genomic

    1. NW_022900916.1 Reference DMR_v1.0_HiC Primary Assembly

      Range
      37168859..37189688
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010633500.3 → XP_010631802.1  nuclear-interacting partner of ALK isoform X1

      UniProtKB/TrEMBL
      A0A091DB32
      Related
      ENSFDAP00000012539.1
      Conserved Domains (2) summary
      pfam07967
      Location:72 → 200
      zf-C3HC; C3HC zinc finger-like
      pfam08600
      Location:247 → 337
      Rsm1; Rsm1-like

    2. XM_010633501.3 → XP_010631803.1  nuclear-interacting partner of ALK isoform X2

      UniProtKB/TrEMBL
      A0A091DB32
      Conserved Domains (2) summary
      pfam07967
      Location:72 → 200
      zf-C3HC; C3HC zinc finger-like
      pfam08600
      Location:247 → 292
      Rsm1; Rsm1-like
    Nucleotide Protein
    Heading Accession and Version

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