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    NXF1 nuclear RNA export factor 1 [ Halichoerus grypus (gray seal) ]

    Gene ID: 118554529, updated on 20-Mar-2024

    Summary

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    Gene symbol
    NXF1
    Gene description
    nuclear RNA export factor 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Halichoerus grypus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Halichoerus
    Orthologs
    human mouse all
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    Genomic context

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    See NXF1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    100 current Tufts_HGry_1.1 (GCF_012393455.1) Unplaced Scaffold NW_023400896.1 (327558..340095)

    NW_023400896.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene WD repeat domain 74 Neighboring gene syntaxin 5 Neighboring gene transmembrane protein 223 Neighboring gene transmembrane protein 179B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023400896 Unplaced Scaffold Reference Tufts_HGry_1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in poly(A)+ mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear RNA export factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Halichoerus grypus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Tufts_HGry_1.1

    Genomic

    1. NW_023400896.1 Reference Tufts_HGry_1.1

      Range
      327558..340095
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036122158.1 → XP_035978051.1  nuclear RNA export factor 1 isoform X1

      Conserved Domains (6) summary
      smart00804
      Location:584 → 646
      TAP_C; C-terminal domain of vertebrate Tap protein
      COG4886
      Location:229 → 355
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00780
      Location:410 → 566
      NTF2; Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many ...
      sd00035
      Location:252 → 294
      LRR_NTF; leucine-rich repeat [structural motif]
      pfam09162
      Location:144 → 226
      Tap-RNA_bind; Tap, RNA-binding
      pfam13855
      Location:293 → 355
      LRR_8; Leucine rich repeat

    2. XM_036122159.1 → XP_035978052.1  nuclear RNA export factor 1 isoform X2

      Conserved Domains (6) summary
      smart00804
      Location:555 → 617
      TAP_C; C-terminal domain of vertebrate Tap protein
      COG4886
      Location:200 → 326
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00780
      Location:381 → 537
      NTF2; Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many ...
      sd00035
      Location:223 → 265
      LRR_NTF; leucine-rich repeat [structural motif]
      pfam09162
      Location:115 → 197
      Tap-RNA_bind; Tap, RNA-binding
      pfam13855
      Location:264 → 326
      LRR_8; Leucine rich repeat

    3. XM_036122160.1 → XP_035978053.1  nuclear RNA export factor 1 isoform X3

      Conserved Domains (5) summary
      smart00804
      Location:496 → 558
      TAP_C; C-terminal domain of vertebrate Tap protein
      cd00780
      Location:322 → 478
      NTF2; Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many ...
      sd00035
      Location:164 → 206
      LRR_NTF; leucine-rich repeat [structural motif]
      pfam09162
      Location:56 → 138
      Tap-RNA_bind; Tap, RNA-binding
      pfam13855
      Location:205 → 267
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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